Hb_029095_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig29095: 1208-8334
Sequence    

Annotation

kegg
ID cit:102614307
description putative disease resistance protein RGA1-like
nr
ID KDP26027.1
description hypothetical protein JCGZ_21060 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067JQ61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21060 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029095_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
2 Hb_093364_010 0.0319397958 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
3 Hb_005486_020 0.0792917623 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
4 Hb_000990_040 0.0797021975 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
5 Hb_002596_090 0.0925571281 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
6 Hb_031685_010 0.0936273789 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_004611_050 0.0940996301 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
8 Hb_000020_020 0.1012031772 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
9 Hb_006789_030 0.1079362772 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
10 Hb_003029_010 0.1086109456 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
11 Hb_002030_090 0.1086410815 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_094439_010 0.1141671424 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
13 Hb_000185_170 0.1175590343 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000265_170 0.1179824061 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
15 Hb_010904_010 0.1207613879 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
16 Hb_003337_020 0.1224298967 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
17 Hb_111997_010 0.1266924641 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
18 Hb_000732_160 0.1266957422 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
19 Hb_003849_030 0.1291701295 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
20 Hb_005016_080 0.1295990268 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]

Gene co-expression network

sample Hb_029095_010 Hb_029095_010 Hb_093364_010 Hb_093364_010 Hb_029095_010--Hb_093364_010 Hb_005486_020 Hb_005486_020 Hb_029095_010--Hb_005486_020 Hb_000990_040 Hb_000990_040 Hb_029095_010--Hb_000990_040 Hb_002596_090 Hb_002596_090 Hb_029095_010--Hb_002596_090 Hb_031685_010 Hb_031685_010 Hb_029095_010--Hb_031685_010 Hb_004611_050 Hb_004611_050 Hb_029095_010--Hb_004611_050 Hb_093364_010--Hb_000990_040 Hb_093364_010--Hb_004611_050 Hb_000020_020 Hb_000020_020 Hb_093364_010--Hb_000020_020 Hb_093364_010--Hb_005486_020 Hb_000185_170 Hb_000185_170 Hb_093364_010--Hb_000185_170 Hb_005486_020--Hb_000990_040 Hb_001352_030 Hb_001352_030 Hb_005486_020--Hb_001352_030 Hb_005486_020--Hb_002596_090 Hb_111997_010 Hb_111997_010 Hb_005486_020--Hb_111997_010 Hb_000990_040--Hb_004611_050 Hb_000990_040--Hb_000185_170 Hb_007894_120 Hb_007894_120 Hb_000990_040--Hb_007894_120 Hb_003029_010 Hb_003029_010 Hb_002596_090--Hb_003029_010 Hb_028487_040 Hb_028487_040 Hb_002596_090--Hb_028487_040 Hb_000152_410 Hb_000152_410 Hb_002596_090--Hb_000152_410 Hb_029584_110 Hb_029584_110 Hb_002596_090--Hb_029584_110 Hb_006789_030 Hb_006789_030 Hb_031685_010--Hb_006789_030 Hb_000732_160 Hb_000732_160 Hb_031685_010--Hb_000732_160 Hb_005888_050 Hb_005888_050 Hb_031685_010--Hb_005888_050 Hb_003337_020 Hb_003337_020 Hb_031685_010--Hb_003337_020 Hb_094439_010 Hb_094439_010 Hb_031685_010--Hb_094439_010 Hb_004117_280 Hb_004117_280 Hb_004611_050--Hb_004117_280 Hb_004611_050--Hb_000020_020 Hb_004611_050--Hb_000185_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.305008 0.562462 0.180528 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.120475 0.340893

CAGE analysis