Hb_000152_410

Information

Type -
Description -
Location Contig152: 359799-363330
Sequence    

Annotation

kegg
ID tcc:TCM_014978
description Leucine-rich repeat protein kinase family protein isoform 1
nr
ID XP_012090406.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
swissprot
ID Q8RY65
description Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1
trembl
ID A0A067JHW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26224 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at5g10290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12994: 359691-363303
cDNA
(Sanger)
(ID:Location)		 003_K12.ab1: 361850-363303 , 026_I21.ab1: 362001-363283 , 033_H18.ab1: 362025-363287 , 043_J19.ab1: 361797-363283

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_410 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
2 Hb_003029_010 0.0727126361 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
3 Hb_002596_090 0.0925596997 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
4 Hb_000878_090 0.0951082789 - - sucrose-phosphatase family protein [Populus trichocarpa]
5 Hb_001769_120 0.0975803229 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
6 Hb_000836_420 0.0986555938 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_028487_040 0.0987940637 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
8 Hb_001160_050 0.1001305161 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
9 Hb_189208_060 0.1007188788 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
10 Hb_000032_090 0.1088627869 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005463_070 0.1129063165 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_000071_090 0.1150350883 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
13 Hb_002010_100 0.1164925152 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
14 Hb_000985_140 0.1173106028 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
15 Hb_009907_020 0.117581417 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
16 Hb_002374_030 0.1177377487 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
17 Hb_029584_110 0.1190447135 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
18 Hb_011794_050 0.1214702372 - - transcription factor, putative [Ricinus communis]
19 Hb_005016_080 0.1262025069 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
20 Hb_004837_200 0.1292337422 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]

Gene co-expression network

sample Hb_000152_410 Hb_000152_410 Hb_003029_010 Hb_003029_010 Hb_000152_410--Hb_003029_010 Hb_002596_090 Hb_002596_090 Hb_000152_410--Hb_002596_090 Hb_000878_090 Hb_000878_090 Hb_000152_410--Hb_000878_090 Hb_001769_120 Hb_001769_120 Hb_000152_410--Hb_001769_120 Hb_000836_420 Hb_000836_420 Hb_000152_410--Hb_000836_420 Hb_028487_040 Hb_028487_040 Hb_000152_410--Hb_028487_040 Hb_029584_110 Hb_029584_110 Hb_003029_010--Hb_029584_110 Hb_003029_010--Hb_002596_090 Hb_003387_080 Hb_003387_080 Hb_003029_010--Hb_003387_080 Hb_029095_010 Hb_029095_010 Hb_003029_010--Hb_029095_010 Hb_005016_080 Hb_005016_080 Hb_003029_010--Hb_005016_080 Hb_002596_090--Hb_028487_040 Hb_005486_020 Hb_005486_020 Hb_002596_090--Hb_005486_020 Hb_002596_090--Hb_029095_010 Hb_002596_090--Hb_029584_110 Hb_009907_020 Hb_009907_020 Hb_000878_090--Hb_009907_020 Hb_001160_050 Hb_001160_050 Hb_000878_090--Hb_001160_050 Hb_008749_010 Hb_008749_010 Hb_000878_090--Hb_008749_010 Hb_002374_030 Hb_002374_030 Hb_000878_090--Hb_002374_030 Hb_004040_010 Hb_004040_010 Hb_000878_090--Hb_004040_010 Hb_000071_090 Hb_000071_090 Hb_001769_120--Hb_000071_090 Hb_001769_120--Hb_009907_020 Hb_001769_120--Hb_028487_040 Hb_001769_120--Hb_001160_050 Hb_001769_120--Hb_000836_420 Hb_000836_420--Hb_001160_050 Hb_189208_060 Hb_189208_060 Hb_000836_420--Hb_189208_060 Hb_001660_080 Hb_001660_080 Hb_000836_420--Hb_001660_080 Hb_000836_420--Hb_002374_030 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_003078_070 Hb_003078_070 Hb_000836_420--Hb_003078_070 Hb_003688_220 Hb_003688_220 Hb_028487_040--Hb_003688_220 Hb_028487_040--Hb_005486_020 Hb_003759_040 Hb_003759_040 Hb_028487_040--Hb_003759_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.023976 11.8946 16.6337 6.35542 0.0534036 0.0435553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0181411 0 0.0815979 2.67039 5.57997

CAGE analysis