Hb_003688_220

Information

Type -
Description -
Location Contig3688: 134862-138957
Sequence    

Annotation

kegg
ID rcu:RCOM_1469670
description glycerophosphoryl diester phosphodiesterase, putative (EC:3.1.4.46)
nr
ID ABK95148.1
description unknown [Populus trichocarpa]
swissprot
ID Q9C907
description Glycerophosphodiester phosphodiesterase GDPD5 OS=Arabidopsis thaliana GN=GDPD5 PE=2 SV=1
trembl
ID A9PFJ5
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005773
description probable glycerophosphoryl diester phosphodiesterase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_220 0.0 - - unknown [Populus trichocarpa]
2 Hb_028487_040 0.093774767 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
3 Hb_000320_040 0.1140567512 - - ATP binding protein, putative [Ricinus communis]
4 Hb_001776_130 0.1142438298 - - metallothionein [Hevea brasiliensis]
5 Hb_151103_010 0.1184166417 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000134_260 0.1199073898 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_011918_030 0.1237918645 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
8 Hb_004567_070 0.1262162305 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001769_120 0.1280590756 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
10 Hb_007076_010 0.129195104 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_001638_120 0.1339375747 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
12 Hb_010407_150 0.1353635999 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
13 Hb_000567_330 0.1364701471 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
14 Hb_004712_090 0.1390071974 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
15 Hb_009907_020 0.1415050672 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
16 Hb_003759_040 0.141887156 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
17 Hb_000905_100 0.1418916289 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
18 Hb_004223_080 0.1426176396 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000002_370 0.1435086176 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
20 Hb_001001_010 0.1435562645 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003688_220 Hb_003688_220 Hb_028487_040 Hb_028487_040 Hb_003688_220--Hb_028487_040 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_151103_010 Hb_151103_010 Hb_003688_220--Hb_151103_010 Hb_000134_260 Hb_000134_260 Hb_003688_220--Hb_000134_260 Hb_011918_030 Hb_011918_030 Hb_003688_220--Hb_011918_030 Hb_002596_090 Hb_002596_090 Hb_028487_040--Hb_002596_090 Hb_000152_410 Hb_000152_410 Hb_028487_040--Hb_000152_410 Hb_005486_020 Hb_005486_020 Hb_028487_040--Hb_005486_020 Hb_001769_120 Hb_001769_120 Hb_028487_040--Hb_001769_120 Hb_003759_040 Hb_003759_040 Hb_028487_040--Hb_003759_040 Hb_001638_120 Hb_001638_120 Hb_000320_040--Hb_001638_120 Hb_002085_090 Hb_002085_090 Hb_000320_040--Hb_002085_090 Hb_007130_020 Hb_007130_020 Hb_000320_040--Hb_007130_020 Hb_000002_370 Hb_000002_370 Hb_000320_040--Hb_000002_370 Hb_001235_160 Hb_001235_160 Hb_000320_040--Hb_001235_160 Hb_000018_090 Hb_000018_090 Hb_001776_130--Hb_000018_090 Hb_002995_010 Hb_002995_010 Hb_001776_130--Hb_002995_010 Hb_005834_050 Hb_005834_050 Hb_001776_130--Hb_005834_050 Hb_001776_130--Hb_003759_040 Hb_009907_020 Hb_009907_020 Hb_001776_130--Hb_009907_020 Hb_007076_010 Hb_007076_010 Hb_151103_010--Hb_007076_010 Hb_010407_150 Hb_010407_150 Hb_151103_010--Hb_010407_150 Hb_001001_010 Hb_001001_010 Hb_151103_010--Hb_001001_010 Hb_002200_020 Hb_002200_020 Hb_151103_010--Hb_002200_020 Hb_151103_010--Hb_028487_040 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_011918_030--Hb_001638_120 Hb_008173_130 Hb_008173_130 Hb_011918_030--Hb_008173_130 Hb_107078_010 Hb_107078_010 Hb_011918_030--Hb_107078_010 Hb_001366_390 Hb_001366_390 Hb_011918_030--Hb_001366_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.234342 4.30636 12.4257 4.06817 0 0.177226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200616 0.131521 0.0493041 1.38711 2.85421

CAGE analysis