Hb_002374_200

Information

Type transcription factor
Description TF Family: NAC
Location Contig2374: 159516-161429
Sequence    

Annotation

kegg
ID rcu:RCOM_0563350
description NAC domain-containing protein, putative
nr
ID AHF27224.1
description NAC transcription factor [Hevea brasiliensis]
swissprot
ID Q39013
description NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2
trembl
ID A0A059SWX0
description NAC transcription factor OS=Hevea brasiliensis GN=NAC3 PE=2 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24862: 159529-161422 , PASA_asmbl_24863: 159541-160442 , PASA_asmbl_24864: 160491-160581
cDNA
(Sanger)
(ID:Location)		 001_K19.ab1: 159531-160061 , 019_F10.ab1: 159531-160830 , 019_H13.ab1: 159531-160816 , 030_F17.ab1: 159531-160908 , 053_O10.ab1: 159531-160866

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_200 0.0 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
2 Hb_002400_020 0.1128116399 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
3 Hb_004551_010 0.1215099016 - - tryptophan synthase beta chain, putative [Ricinus communis]
4 Hb_000134_260 0.1245491898 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_000454_080 0.1312547066 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
6 Hb_001660_080 0.1366706757 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
7 Hb_000322_160 0.1403994706 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2-like [Jatropha curcas]
8 Hb_002311_160 0.1410268345 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
9 Hb_031266_020 0.1464888356 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
10 Hb_000836_420 0.1526468376 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_004970_070 0.1560868715 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
12 Hb_000172_410 0.1621393271 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_000035_140 0.1653820486 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
14 Hb_003058_030 0.1659270505 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_001022_020 0.1666412975 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
16 Hb_001951_210 0.1667479777 - - conserved hypothetical protein [Ricinus communis]
17 Hb_189208_060 0.1670184534 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
18 Hb_077694_010 0.1733537498 - - uncharacterized protein LOC100305624 [Glycine max]
19 Hb_000592_070 0.1737994125 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
20 Hb_000071_090 0.1741445506 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_200 Hb_002374_200 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_004551_010 Hb_004551_010 Hb_002374_200--Hb_004551_010 Hb_000134_260 Hb_000134_260 Hb_002374_200--Hb_000134_260 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_001660_080 Hb_001660_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_000172_410 Hb_000172_410 Hb_002400_020--Hb_000172_410 Hb_002400_020--Hb_001660_080 Hb_121540_010 Hb_121540_010 Hb_002400_020--Hb_121540_010 Hb_002311_160 Hb_002311_160 Hb_002400_020--Hb_002311_160 Hb_005381_010 Hb_005381_010 Hb_002400_020--Hb_005381_010 Hb_031266_020 Hb_031266_020 Hb_004551_010--Hb_031266_020 Hb_004551_010--Hb_000134_260 Hb_009252_090 Hb_009252_090 Hb_004551_010--Hb_009252_090 Hb_004551_010--Hb_001660_080 Hb_000035_140 Hb_000035_140 Hb_004551_010--Hb_000035_140 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000134_260--Hb_000035_140 Hb_000071_090 Hb_000071_090 Hb_000454_080--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_000454_080--Hb_000836_420 Hb_000495_050 Hb_000495_050 Hb_000454_080--Hb_000495_050 Hb_000985_140 Hb_000985_140 Hb_000454_080--Hb_000985_140 Hb_008406_070 Hb_008406_070 Hb_000454_080--Hb_008406_070 Hb_001769_120 Hb_001769_120 Hb_000454_080--Hb_001769_120 Hb_001660_080--Hb_005381_010 Hb_001660_080--Hb_000836_420 Hb_001660_080--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_001660_080--Hb_003060_150 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060 Hb_004201_040 Hb_004201_040 Hb_000322_160--Hb_004201_040 Hb_000322_160--Hb_000134_260 Hb_001541_190 Hb_001541_190 Hb_000322_160--Hb_001541_190 Hb_000567_330 Hb_000567_330 Hb_000322_160--Hb_000567_330 Hb_001307_020 Hb_001307_020 Hb_000322_160--Hb_001307_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653155 353.342 586.615 163.203 1.49204 0.674222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93439 49.2629 3.58754 29.1818 75.9216

CAGE analysis