Hb_004201_040

Information

Type -
Description -
Location Contig4201: 63002-64297
Sequence    

Annotation

kegg
ID rcu:RCOM_1225350
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_002524836.1
description Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID B9SFR7
description Mitogen-activated protein kinase kinase kinase, putative OS=Ricinus communis GN=RCOM_1225350 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_F21.ab1: 63658-64358

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004201_040 0.0 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
2 Hb_000322_160 0.0770882589 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2-like [Jatropha curcas]
3 Hb_000567_330 0.1577676837 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
4 Hb_033006_020 0.1600713393 - - Aspartate aminotransferase, putative [Ricinus communis]
5 Hb_001307_020 0.1642544232 - - electron carrier, putative [Ricinus communis]
6 Hb_000905_100 0.1688325441 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
7 Hb_000243_290 0.1709066363 - - plastidic aldolase family protein [Populus trichocarpa]
8 Hb_021409_110 0.1794621584 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001541_190 0.1810687373 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
10 Hb_000134_260 0.1869166299 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_000049_030 0.1873536418 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000836_090 0.1881134128 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
13 Hb_002374_200 0.1886480983 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
14 Hb_003038_110 0.1905030035 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
15 Hb_089305_010 0.1920153127 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
16 Hb_000062_130 0.1923270724 - - cytochrome P450, putative [Ricinus communis]
17 Hb_059318_010 0.1932903173 - - glutamate receptor 2 plant, putative [Ricinus communis]
18 Hb_000438_200 0.1964020676 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
19 Hb_004223_080 0.1968374214 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_002030_020 0.1979760909 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004201_040 Hb_004201_040 Hb_000322_160 Hb_000322_160 Hb_004201_040--Hb_000322_160 Hb_000567_330 Hb_000567_330 Hb_004201_040--Hb_000567_330 Hb_033006_020 Hb_033006_020 Hb_004201_040--Hb_033006_020 Hb_001307_020 Hb_001307_020 Hb_004201_040--Hb_001307_020 Hb_000905_100 Hb_000905_100 Hb_004201_040--Hb_000905_100 Hb_000243_290 Hb_000243_290 Hb_004201_040--Hb_000243_290 Hb_002374_200 Hb_002374_200 Hb_000322_160--Hb_002374_200 Hb_000134_260 Hb_000134_260 Hb_000322_160--Hb_000134_260 Hb_001541_190 Hb_001541_190 Hb_000322_160--Hb_001541_190 Hb_000322_160--Hb_000567_330 Hb_000322_160--Hb_001307_020 Hb_089305_010 Hb_089305_010 Hb_000567_330--Hb_089305_010 Hb_007130_020 Hb_007130_020 Hb_000567_330--Hb_007130_020 Hb_000567_330--Hb_033006_020 Hb_004899_110 Hb_004899_110 Hb_000567_330--Hb_004899_110 Hb_000836_090 Hb_000836_090 Hb_000567_330--Hb_000836_090 Hb_010812_060 Hb_010812_060 Hb_000567_330--Hb_010812_060 Hb_033006_020--Hb_000836_090 Hb_000645_260 Hb_000645_260 Hb_033006_020--Hb_000645_260 Hb_002311_280 Hb_002311_280 Hb_033006_020--Hb_002311_280 Hb_001377_120 Hb_001377_120 Hb_033006_020--Hb_001377_120 Hb_033006_020--Hb_007130_020 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020 Hb_004223_080 Hb_004223_080 Hb_001307_020--Hb_004223_080 Hb_001307_020--Hb_001541_190 Hb_000027_160 Hb_000027_160 Hb_001307_020--Hb_000027_160 Hb_001828_110 Hb_001828_110 Hb_001307_020--Hb_001828_110 Hb_001307_020--Hb_000905_100 Hb_000809_130 Hb_000809_130 Hb_001307_020--Hb_000809_130 Hb_000905_100--Hb_000836_090 Hb_000905_100--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_000905_100--Hb_000002_370 Hb_002053_180 Hb_002053_180 Hb_000905_100--Hb_002053_180 Hb_000905_100--Hb_000027_160 Hb_000905_100--Hb_033006_020 Hb_059318_010 Hb_059318_010 Hb_000243_290--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_000243_290--Hb_111997_010 Hb_074966_010 Hb_074966_010 Hb_000243_290--Hb_074966_010 Hb_032731_010 Hb_032731_010 Hb_000243_290--Hb_032731_010 Hb_002030_020 Hb_002030_020 Hb_000243_290--Hb_002030_020 Hb_001352_030 Hb_001352_030 Hb_000243_290--Hb_001352_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.397115 26.0819 65.8817 29.1153 0.515459 0.232932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.481341 7.19437 2.12112 0.699128 21.7291

CAGE analysis