Hb_002030_020

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig2030: 38976-39731
Sequence    

Annotation

kegg
ID cic:CICLE_v10027024mg
description hypothetical protein
nr
ID XP_012081639.1
description PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
swissprot
ID Q6YXH5
description Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica GN=ZHD1 PE=2 SV=1
trembl
ID A0A067KBY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18680 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_020 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
2 Hb_101133_040 0.0787141669 - - PREDICTED: nudix hydrolase 18, mitochondrial-like [Jatropha curcas]
3 Hb_000243_290 0.1072892659 - - plastidic aldolase family protein [Populus trichocarpa]
4 Hb_000343_050 0.1246314551 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002477_200 0.1257492759 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
6 Hb_074966_010 0.1328830586 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_005890_010 0.1336578113 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
8 Hb_006188_020 0.138557414 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
9 Hb_059318_010 0.1386923505 - - glutamate receptor 2 plant, putative [Ricinus communis]
10 Hb_014068_010 0.1391821857 - - PREDICTED: phototropin-1 [Jatropha curcas]
11 Hb_032731_010 0.141046138 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
12 Hb_060534_010 0.1415725437 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
13 Hb_059429_010 0.141615931 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
14 Hb_000890_170 0.145844709 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
15 Hb_135714_010 0.146849774 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
16 Hb_111997_010 0.1471175699 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
17 Hb_005888_050 0.149774384 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001926_020 0.1497775378 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
19 Hb_000049_030 0.1504646801 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000413_190 0.1516290665 - - PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_002030_020 Hb_002030_020 Hb_101133_040 Hb_101133_040 Hb_002030_020--Hb_101133_040 Hb_000243_290 Hb_000243_290 Hb_002030_020--Hb_000243_290 Hb_000343_050 Hb_000343_050 Hb_002030_020--Hb_000343_050 Hb_002477_200 Hb_002477_200 Hb_002030_020--Hb_002477_200 Hb_074966_010 Hb_074966_010 Hb_002030_020--Hb_074966_010 Hb_005890_010 Hb_005890_010 Hb_002030_020--Hb_005890_010 Hb_002027_100 Hb_002027_100 Hb_101133_040--Hb_002027_100 Hb_060534_010 Hb_060534_010 Hb_101133_040--Hb_060534_010 Hb_101133_040--Hb_000343_050 Hb_012833_010 Hb_012833_010 Hb_101133_040--Hb_012833_010 Hb_135714_010 Hb_135714_010 Hb_101133_040--Hb_135714_010 Hb_059318_010 Hb_059318_010 Hb_000243_290--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_000243_290--Hb_111997_010 Hb_000243_290--Hb_074966_010 Hb_032731_010 Hb_032731_010 Hb_000243_290--Hb_032731_010 Hb_001352_030 Hb_001352_030 Hb_000243_290--Hb_001352_030 Hb_001677_170 Hb_001677_170 Hb_000343_050--Hb_001677_170 Hb_006188_020 Hb_006188_020 Hb_000343_050--Hb_006188_020 Hb_000343_050--Hb_005890_010 Hb_001926_070 Hb_001926_070 Hb_000343_050--Hb_001926_070 Hb_000343_050--Hb_032731_010 Hb_000343_050--Hb_111997_010 Hb_008202_010 Hb_008202_010 Hb_002477_200--Hb_008202_010 Hb_002477_200--Hb_006188_020 Hb_002477_200--Hb_074966_010 Hb_018134_010 Hb_018134_010 Hb_002477_200--Hb_018134_010 Hb_002477_200--Hb_111997_010 Hb_001926_020 Hb_001926_020 Hb_074966_010--Hb_001926_020 Hb_074966_010--Hb_059318_010 Hb_074966_010--Hb_111997_010 Hb_003777_120 Hb_003777_120 Hb_074966_010--Hb_003777_120 Hb_074966_010--Hb_032731_010 Hb_005888_050 Hb_005888_050 Hb_074966_010--Hb_005888_050 Hb_000116_160 Hb_000116_160 Hb_005890_010--Hb_000116_160 Hb_005488_210 Hb_005488_210 Hb_005890_010--Hb_005488_210 Hb_005890_010--Hb_001926_070 Hb_004117_380 Hb_004117_380 Hb_005890_010--Hb_004117_380 Hb_005890_010--Hb_032731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25275 5.18469 14.5875 3.99843 0.031739 0.134863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.363995 0.114474 0 0.0928605 7.31005

CAGE analysis