Hb_002477_200

Information

Type -
Description -
Location Contig2477: 135305-149456
Sequence    

Annotation

kegg
ID rcu:RCOM_0654550
description ankyrin repeat-containing protein, putative
nr
ID XP_012069243.1
description PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B9S5T7
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0654550 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25795: 134863-138106 , PASA_asmbl_25796: 134863-138106 , PASA_asmbl_25797: 138308-138416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_200 0.0 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
2 Hb_008202_010 0.1203063553 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_006188_020 0.1208278672 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
4 Hb_074966_010 0.1228939134 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_002030_020 0.1257492759 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
6 Hb_018134_010 0.1258085908 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
7 Hb_111997_010 0.1335695369 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
8 Hb_004040_010 0.1349408555 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
9 Hb_026016_010 0.1361992386 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_000243_290 0.1370895786 - - plastidic aldolase family protein [Populus trichocarpa]
11 Hb_005888_050 0.1381483401 - - ATP binding protein, putative [Ricinus communis]
12 Hb_059318_010 0.1390322471 - - glutamate receptor 2 plant, putative [Ricinus communis]
13 Hb_029584_110 0.1395258726 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
14 Hb_001926_020 0.1414914209 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
15 Hb_000343_050 0.141910981 - - conserved hypothetical protein [Ricinus communis]
16 Hb_135714_010 0.1443679213 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
17 Hb_002596_090 0.1455487458 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
18 Hb_001366_390 0.14755747 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
19 Hb_011794_050 0.1483742879 - - transcription factor, putative [Ricinus communis]
20 Hb_008019_010 0.1488377092 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002477_200 Hb_002477_200 Hb_008202_010 Hb_008202_010 Hb_002477_200--Hb_008202_010 Hb_006188_020 Hb_006188_020 Hb_002477_200--Hb_006188_020 Hb_074966_010 Hb_074966_010 Hb_002477_200--Hb_074966_010 Hb_002030_020 Hb_002030_020 Hb_002477_200--Hb_002030_020 Hb_018134_010 Hb_018134_010 Hb_002477_200--Hb_018134_010 Hb_111997_010 Hb_111997_010 Hb_002477_200--Hb_111997_010 Hb_029584_110 Hb_029584_110 Hb_008202_010--Hb_029584_110 Hb_135714_010 Hb_135714_010 Hb_008202_010--Hb_135714_010 Hb_005888_050 Hb_005888_050 Hb_008202_010--Hb_005888_050 Hb_003970_010 Hb_003970_010 Hb_008202_010--Hb_003970_010 Hb_002596_090 Hb_002596_090 Hb_008202_010--Hb_002596_090 Hb_008202_010--Hb_111997_010 Hb_006188_020--Hb_111997_010 Hb_006188_020--Hb_074966_010 Hb_000343_050 Hb_000343_050 Hb_006188_020--Hb_000343_050 Hb_001677_170 Hb_001677_170 Hb_006188_020--Hb_001677_170 Hb_001926_020 Hb_001926_020 Hb_006188_020--Hb_001926_020 Hb_006188_020--Hb_005888_050 Hb_074966_010--Hb_001926_020 Hb_059318_010 Hb_059318_010 Hb_074966_010--Hb_059318_010 Hb_074966_010--Hb_111997_010 Hb_003777_120 Hb_003777_120 Hb_074966_010--Hb_003777_120 Hb_032731_010 Hb_032731_010 Hb_074966_010--Hb_032731_010 Hb_074966_010--Hb_005888_050 Hb_101133_040 Hb_101133_040 Hb_002030_020--Hb_101133_040 Hb_000243_290 Hb_000243_290 Hb_002030_020--Hb_000243_290 Hb_002030_020--Hb_000343_050 Hb_002030_020--Hb_074966_010 Hb_005890_010 Hb_005890_010 Hb_002030_020--Hb_005890_010 Hb_008019_010 Hb_008019_010 Hb_018134_010--Hb_008019_010 Hb_004040_010 Hb_004040_010 Hb_018134_010--Hb_004040_010 Hb_054926_010 Hb_054926_010 Hb_018134_010--Hb_054926_010 Hb_018134_010--Hb_111997_010 Hb_018134_010--Hb_001677_170 Hb_018134_010--Hb_059318_010 Hb_111997_010--Hb_001677_170 Hb_001606_010 Hb_001606_010 Hb_111997_010--Hb_001606_010 Hb_111997_010--Hb_059318_010 Hb_001926_070 Hb_001926_070 Hb_111997_010--Hb_001926_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109194 1.47232 2.608 0.893165 0 0.00721177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0294692 0 0.0760956 1.34508

CAGE analysis