Hb_111997_010

Information

Type -
Description -
Location Contig111997: 604-1551
Sequence    

Annotation

kegg
ID vvi:100265971
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
nr
ID XP_010649409.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID F6I0H1
description Serine/threonine-protein kinase OS=Vitis vinifera GN=VIT_04s0044g00820 PE=3 SV=1
Gene Ontology
ID GO:0005488
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111997_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
2 Hb_074966_010 0.0652059316 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_006188_020 0.0761596129 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
4 Hb_001677_170 0.076682359 - - hypothetical protein M569_03661, partial [Genlisea aurea]
5 Hb_001606_010 0.0867070332 - - kinase, putative [Ricinus communis]
6 Hb_059318_010 0.0883841081 - - glutamate receptor 2 plant, putative [Ricinus communis]
7 Hb_001926_070 0.0886001119 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
8 Hb_008019_010 0.0919486047 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
9 Hb_003777_120 0.0926826541 - - -
10 Hb_000265_170 0.0941476101 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
11 Hb_001352_030 0.0942192944 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
12 Hb_018134_010 0.0946015441 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
13 Hb_000243_290 0.0968915804 - - plastidic aldolase family protein [Populus trichocarpa]
14 Hb_001926_020 0.0978311683 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
15 Hb_005486_020 0.0979689754 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
16 Hb_032731_010 0.098010346 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
17 Hb_008202_010 0.1026697788 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_004040_010 0.1027289041 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
19 Hb_000343_050 0.1040338524 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005888_050 0.1045237573 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_111997_010 Hb_111997_010 Hb_074966_010 Hb_074966_010 Hb_111997_010--Hb_074966_010 Hb_006188_020 Hb_006188_020 Hb_111997_010--Hb_006188_020 Hb_001677_170 Hb_001677_170 Hb_111997_010--Hb_001677_170 Hb_001606_010 Hb_001606_010 Hb_111997_010--Hb_001606_010 Hb_059318_010 Hb_059318_010 Hb_111997_010--Hb_059318_010 Hb_001926_070 Hb_001926_070 Hb_111997_010--Hb_001926_070 Hb_001926_020 Hb_001926_020 Hb_074966_010--Hb_001926_020 Hb_074966_010--Hb_059318_010 Hb_003777_120 Hb_003777_120 Hb_074966_010--Hb_003777_120 Hb_032731_010 Hb_032731_010 Hb_074966_010--Hb_032731_010 Hb_005888_050 Hb_005888_050 Hb_074966_010--Hb_005888_050 Hb_006188_020--Hb_074966_010 Hb_000343_050 Hb_000343_050 Hb_006188_020--Hb_000343_050 Hb_006188_020--Hb_001677_170 Hb_006188_020--Hb_001926_020 Hb_006188_020--Hb_005888_050 Hb_001677_170--Hb_001926_070 Hb_001677_170--Hb_000343_050 Hb_000031_320 Hb_000031_320 Hb_001677_170--Hb_000031_320 Hb_001677_170--Hb_001606_010 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_001352_030 Hb_001352_030 Hb_001606_010--Hb_001352_030 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_001606_010--Hb_032731_010 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050 Hb_059318_010--Hb_032731_010 Hb_059318_010--Hb_001926_020 Hb_059318_010--Hb_003777_120 Hb_008019_010 Hb_008019_010 Hb_059318_010--Hb_008019_010 Hb_000049_030 Hb_000049_030 Hb_059318_010--Hb_000049_030 Hb_000007_330 Hb_000007_330 Hb_001926_070--Hb_000007_330 Hb_001926_070--Hb_032731_010 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.90101 19.4754 8.15456 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108371 0 0 1.18406 12.2433

CAGE analysis