Hb_000486_020

Information

Type -
Description -
Location Contig486: 52039-53532
Sequence    

Annotation

kegg
ID rcu:RCOM_0085880
description Agglutinin-2 precursor, putative
nr
ID XP_012087950.1
description PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
swissprot
ID Q9M2S4
description L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=2 SV=1
trembl
ID A0A067JWX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25074 PE=4 SV=1
Gene Ontology
ID GO:0030246
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44983: 52098-53497
cDNA
(Sanger)
(ID:Location)		 003_M16.ab1: 52127-52799

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000486_020 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
2 Hb_006618_110 0.076638835 - - -
3 Hb_010534_040 0.0772671732 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
4 Hb_001606_010 0.0825767131 - - kinase, putative [Ricinus communis]
5 Hb_010584_020 0.0862047158 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
6 Hb_010136_010 0.0873785027 - - Putative receptor-like protein kinase [Glycine soja]
7 Hb_001926_070 0.0882766849 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
8 Hb_005892_050 0.0921141609 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
9 Hb_000302_360 0.0923263582 - - beta-carotene hydroxylase, putative [Ricinus communis]
10 Hb_001942_010 0.0966488785 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
11 Hb_000890_170 0.0967284756 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
12 Hb_001148_110 0.0974233454 - - -
13 Hb_001051_010 0.0979776892 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
14 Hb_003873_020 0.0984378184 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
15 Hb_000023_130 0.1009678868 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
16 Hb_003643_050 0.1018937117 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
17 Hb_000007_330 0.1037026817 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
18 Hb_011013_040 0.1047119999 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
19 Hb_132356_010 0.105606405 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_000759_040 0.1061261631 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]

Gene co-expression network

sample Hb_000486_020 Hb_000486_020 Hb_006618_110 Hb_006618_110 Hb_000486_020--Hb_006618_110 Hb_010534_040 Hb_010534_040 Hb_000486_020--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000486_020--Hb_001606_010 Hb_010584_020 Hb_010584_020 Hb_000486_020--Hb_010584_020 Hb_010136_010 Hb_010136_010 Hb_000486_020--Hb_010136_010 Hb_001926_070 Hb_001926_070 Hb_000486_020--Hb_001926_070 Hb_007545_070 Hb_007545_070 Hb_006618_110--Hb_007545_070 Hb_003937_010 Hb_003937_010 Hb_006618_110--Hb_003937_010 Hb_005892_050 Hb_005892_050 Hb_006618_110--Hb_005892_050 Hb_011013_040 Hb_011013_040 Hb_006618_110--Hb_011013_040 Hb_006618_110--Hb_010136_010 Hb_000302_360 Hb_000302_360 Hb_010534_040--Hb_000302_360 Hb_001352_030 Hb_001352_030 Hb_010534_040--Hb_001352_030 Hb_010534_040--Hb_001606_010 Hb_000645_260 Hb_000645_260 Hb_010534_040--Hb_000645_260 Hb_002890_160 Hb_002890_160 Hb_010534_040--Hb_002890_160 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_001606_010--Hb_001352_030 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050 Hb_010584_020--Hb_003937_010 Hb_010584_020--Hb_006618_110 Hb_010584_020--Hb_010534_040 Hb_000155_020 Hb_000155_020 Hb_010584_020--Hb_000155_020 Hb_001051_010 Hb_001051_010 Hb_010584_020--Hb_001051_010 Hb_003435_030 Hb_003435_030 Hb_010136_010--Hb_003435_030 Hb_010136_010--Hb_000155_020 Hb_010136_010--Hb_011013_040 Hb_001115_070 Hb_001115_070 Hb_010136_010--Hb_001115_070 Hb_004017_030 Hb_004017_030 Hb_010136_010--Hb_004017_030 Hb_012395_090 Hb_012395_090 Hb_010136_010--Hb_012395_090 Hb_000007_330 Hb_000007_330 Hb_001926_070--Hb_000007_330 Hb_001926_070--Hb_032731_010 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_001926_070--Hb_000890_170 Hb_001926_070--Hb_010136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.326938 6.67749 31.0677 15.9702 0.139813 0.0670852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.35598 24.0377

CAGE analysis