Hb_000645_260

Information

Type -
Description -
Location Contig645: 227925-230411
Sequence    

Annotation

kegg
ID rcu:RCOM_0999820
description hypothetical protein
nr
ID XP_012084029.1
description PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RZM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0999820 PE=4 SV=1
Gene Ontology
ID GO:0007623
description camp-regulated phosphoprotein 19-related protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52286: 227933-230542
cDNA
(Sanger)
(ID:Location)		 042_A15.ab1: 227933-230287 , 043_M01.ab1: 227933-230287

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_260 0.0 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
2 Hb_000982_100 0.0866064609 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
3 Hb_001269_060 0.0870998884 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
4 Hb_014720_140 0.0886706521 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
5 Hb_000302_360 0.0887827723 - - beta-carotene hydroxylase, putative [Ricinus communis]
6 Hb_033006_020 0.0923489535 - - Aspartate aminotransferase, putative [Ricinus communis]
7 Hb_001377_120 0.0926755409 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
8 Hb_010534_040 0.0930374376 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
9 Hb_003531_050 0.0999086269 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
10 Hb_000486_020 0.1064199784 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
11 Hb_015934_060 0.1065318462 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
12 Hb_006816_250 0.10764157 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
13 Hb_001936_190 0.1110560457 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
14 Hb_000836_090 0.1112190204 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
15 Hb_000020_090 0.1135174877 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
16 Hb_002890_160 0.1156725763 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
17 Hb_001141_350 0.1163548207 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
18 Hb_001352_030 0.1167347281 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
19 Hb_000313_250 0.1178195103 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
20 Hb_004531_170 0.1200881762 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_260 Hb_000645_260 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_001269_060 Hb_001269_060 Hb_000645_260--Hb_001269_060 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000302_360 Hb_000302_360 Hb_000645_260--Hb_000302_360 Hb_033006_020 Hb_033006_020 Hb_000645_260--Hb_033006_020 Hb_001377_120 Hb_001377_120 Hb_000645_260--Hb_001377_120 Hb_004531_170 Hb_004531_170 Hb_000982_100--Hb_004531_170 Hb_002244_020 Hb_002244_020 Hb_000982_100--Hb_002244_020 Hb_000127_100 Hb_000127_100 Hb_000982_100--Hb_000127_100 Hb_000486_020 Hb_000486_020 Hb_000982_100--Hb_000486_020 Hb_004117_370 Hb_004117_370 Hb_000982_100--Hb_004117_370 Hb_001269_060--Hb_001377_120 Hb_121313_010 Hb_121313_010 Hb_001269_060--Hb_121313_010 Hb_001269_060--Hb_000302_360 Hb_004218_140 Hb_004218_140 Hb_001269_060--Hb_004218_140 Hb_027684_010 Hb_027684_010 Hb_001269_060--Hb_027684_010 Hb_014720_140--Hb_000302_360 Hb_010534_040 Hb_010534_040 Hb_014720_140--Hb_010534_040 Hb_012833_010 Hb_012833_010 Hb_014720_140--Hb_012833_010 Hb_000313_250 Hb_000313_250 Hb_014720_140--Hb_000313_250 Hb_014720_140--Hb_033006_020 Hb_000302_360--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000302_360--Hb_001606_010 Hb_015934_060 Hb_015934_060 Hb_000302_360--Hb_015934_060 Hb_000836_090 Hb_000836_090 Hb_033006_020--Hb_000836_090 Hb_002311_280 Hb_002311_280 Hb_033006_020--Hb_002311_280 Hb_033006_020--Hb_001377_120 Hb_007130_020 Hb_007130_020 Hb_033006_020--Hb_007130_020 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020 Hb_001377_120--Hb_121313_010 Hb_001377_120--Hb_000302_360 Hb_006816_250 Hb_006816_250 Hb_001377_120--Hb_006816_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59937 17.9014 84.5096 47.5342 0.629278 0.383024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93403 1.33037 0.67846 5.12876 55.9008

CAGE analysis