Hb_002244_020

Information

Type -
Description -
Location Contig2244: 78524-79771
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10310g
description POPTRDRAFT_557402; U-box domain-containing family protein
nr
ID XP_012078957.1
description PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
swissprot
ID Q9FXA4
description U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1
trembl
ID A0A067KJ43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14786 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002244_020 0.0 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
2 Hb_000982_100 0.1031516057 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
3 Hb_001942_010 0.1049596758 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
4 Hb_084303_010 0.1135286531 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000413_050 0.1178872489 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
6 Hb_003038_230 0.1234518998 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
7 Hb_000486_020 0.1270693314 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
8 Hb_004220_010 0.1282016858 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
9 Hb_011013_040 0.1324993134 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
10 Hb_029695_090 0.1332076072 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
11 Hb_012395_090 0.1337845229 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
12 Hb_010136_010 0.1346732375 - - Putative receptor-like protein kinase [Glycine soja]
13 Hb_127629_010 0.1348480133 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
14 Hb_008412_040 0.1356698852 - - unnamed protein product [Vitis vinifera]
15 Hb_000413_190 0.1363013182 - - PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]
16 Hb_000007_330 0.1381742055 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
17 Hb_004223_150 0.1385459522 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
18 Hb_004531_170 0.1386556069 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
19 Hb_000046_120 0.1389709244 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
20 Hb_005488_210 0.1417470059 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002244_020 Hb_002244_020 Hb_000982_100 Hb_000982_100 Hb_002244_020--Hb_000982_100 Hb_001942_010 Hb_001942_010 Hb_002244_020--Hb_001942_010 Hb_084303_010 Hb_084303_010 Hb_002244_020--Hb_084303_010 Hb_000413_050 Hb_000413_050 Hb_002244_020--Hb_000413_050 Hb_003038_230 Hb_003038_230 Hb_002244_020--Hb_003038_230 Hb_000486_020 Hb_000486_020 Hb_002244_020--Hb_000486_020 Hb_000645_260 Hb_000645_260 Hb_000982_100--Hb_000645_260 Hb_004531_170 Hb_004531_170 Hb_000982_100--Hb_004531_170 Hb_000127_100 Hb_000127_100 Hb_000982_100--Hb_000127_100 Hb_000982_100--Hb_000486_020 Hb_004117_370 Hb_004117_370 Hb_000982_100--Hb_004117_370 Hb_000046_120 Hb_000046_120 Hb_001942_010--Hb_000046_120 Hb_012395_090 Hb_012395_090 Hb_001942_010--Hb_012395_090 Hb_003435_030 Hb_003435_030 Hb_001942_010--Hb_003435_030 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_002702_010 Hb_002702_010 Hb_001942_010--Hb_002702_010 Hb_010136_010 Hb_010136_010 Hb_001942_010--Hb_010136_010 Hb_005337_100 Hb_005337_100 Hb_084303_010--Hb_005337_100 Hb_084303_010--Hb_001942_010 Hb_005725_240 Hb_005725_240 Hb_084303_010--Hb_005725_240 Hb_001638_200 Hb_001638_200 Hb_084303_010--Hb_001638_200 Hb_000156_110 Hb_000156_110 Hb_084303_010--Hb_000156_110 Hb_060253_010 Hb_060253_010 Hb_084303_010--Hb_060253_010 Hb_029695_090 Hb_029695_090 Hb_000413_050--Hb_029695_090 Hb_000116_160 Hb_000116_160 Hb_000413_050--Hb_000116_160 Hb_000007_330 Hb_000007_330 Hb_000413_050--Hb_000007_330 Hb_005488_210 Hb_005488_210 Hb_000413_050--Hb_005488_210 Hb_127629_010 Hb_127629_010 Hb_000413_050--Hb_127629_010 Hb_005890_010 Hb_005890_010 Hb_000413_050--Hb_005890_010 Hb_001266_010 Hb_001266_010 Hb_003038_230--Hb_001266_010 Hb_001975_120 Hb_001975_120 Hb_003038_230--Hb_001975_120 Hb_003038_230--Hb_011013_040 Hb_001424_010 Hb_001424_010 Hb_003038_230--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_003038_230--Hb_000697_030 Hb_001159_050 Hb_001159_050 Hb_003038_230--Hb_001159_050 Hb_006618_110 Hb_006618_110 Hb_000486_020--Hb_006618_110 Hb_010534_040 Hb_010534_040 Hb_000486_020--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000486_020--Hb_001606_010 Hb_010584_020 Hb_010584_020 Hb_000486_020--Hb_010584_020 Hb_000486_020--Hb_010136_010 Hb_001926_070 Hb_001926_070 Hb_000486_020--Hb_001926_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.59253 1.75348 8.03242 4.91205 0.0476665 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0853434 7.32729

CAGE analysis