Hb_005725_240

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5725: 153829-157436
Sequence    

Annotation

kegg
ID rcu:RCOM_1586090
description DNA binding protein, putative
nr
ID XP_012068164.1
description PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
swissprot
ID Q6NKN9
description Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=1 SV=1
trembl
ID A0A067L2W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15985 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh74 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49427: 153815-157143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_240 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
2 Hb_000976_400 0.059503513 - - synaptotagmin, putative [Ricinus communis]
3 Hb_000212_410 0.078436382 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
4 Hb_084303_010 0.088875921 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000622_050 0.0925063255 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000012_330 0.0964516126 - - pollen specific protein sf21, putative [Ricinus communis]
7 Hb_000816_240 0.0981153665 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
8 Hb_009788_020 0.0990727969 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
9 Hb_001936_190 0.1022116563 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
10 Hb_007270_020 0.1030995533 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
11 Hb_000627_050 0.1041542421 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
12 Hb_000020_090 0.1042470764 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
13 Hb_001148_110 0.1052097668 - - -
14 Hb_060253_010 0.1052119033 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
15 Hb_000424_130 0.1067103784 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
16 Hb_000703_120 0.1080092027 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
17 Hb_001750_020 0.1092011639 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
18 Hb_003580_050 0.1093429026 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
19 Hb_002818_150 0.1097286228 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
20 Hb_000046_120 0.1103264272 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005725_240 Hb_005725_240 Hb_000976_400 Hb_000976_400 Hb_005725_240--Hb_000976_400 Hb_000212_410 Hb_000212_410 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_000622_050 Hb_000622_050 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_000816_240 Hb_000816_240 Hb_005725_240--Hb_000816_240 Hb_000976_400--Hb_000622_050 Hb_000976_400--Hb_000212_410 Hb_001148_110 Hb_001148_110 Hb_000976_400--Hb_001148_110 Hb_000976_400--Hb_000816_240 Hb_004220_010 Hb_004220_010 Hb_000976_400--Hb_004220_010 Hb_000627_050 Hb_000627_050 Hb_000212_410--Hb_000627_050 Hb_009788_020 Hb_009788_020 Hb_000212_410--Hb_009788_020 Hb_000703_120 Hb_000703_120 Hb_000212_410--Hb_000703_120 Hb_007270_020 Hb_007270_020 Hb_000212_410--Hb_007270_020 Hb_002724_010 Hb_002724_010 Hb_000212_410--Hb_002724_010 Hb_060253_010 Hb_060253_010 Hb_000212_410--Hb_060253_010 Hb_005337_100 Hb_005337_100 Hb_084303_010--Hb_005337_100 Hb_001942_010 Hb_001942_010 Hb_084303_010--Hb_001942_010 Hb_001638_200 Hb_001638_200 Hb_084303_010--Hb_001638_200 Hb_000156_110 Hb_000156_110 Hb_084303_010--Hb_000156_110 Hb_084303_010--Hb_060253_010 Hb_000622_050--Hb_000012_330 Hb_000622_050--Hb_004220_010 Hb_012098_160 Hb_012098_160 Hb_000622_050--Hb_012098_160 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_000012_330--Hb_012098_160 Hb_003835_080 Hb_003835_080 Hb_000012_330--Hb_003835_080 Hb_012484_050 Hb_012484_050 Hb_000012_330--Hb_012484_050 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280 Hb_137222_010 Hb_137222_010 Hb_000816_240--Hb_137222_010 Hb_004096_210 Hb_004096_210 Hb_000816_240--Hb_004096_210 Hb_069696_020 Hb_069696_020 Hb_000816_240--Hb_069696_020 Hb_006075_030 Hb_006075_030 Hb_000816_240--Hb_006075_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.573312 2.56475 18.3051 15.5006 0.196767 0.0819083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102581 0.107627 0 2.25399 18.8579

CAGE analysis