Hb_006075_030

Information

Type -
Description -
Location Contig6075: 26575-29747
Sequence    

Annotation

kegg
ID rcu:RCOM_0851700
description hypothetical protein
nr
ID XP_012081932.1
description PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RUB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0851700 PE=4 SV=1
Gene Ontology
ID GO:0005515
description PREDICTED: uncharacterized protein LOC105641890 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50807: 26437-29790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006075_030 0.0 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
2 Hb_002374_180 0.0628279568 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
3 Hb_006831_090 0.0866389405 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
4 Hb_000329_780 0.0908796902 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
5 Hb_002600_170 0.0926580901 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005532_030 0.1002054355 - - DNA binding protein, putative [Ricinus communis]
7 Hb_002572_040 0.100926362 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
8 Hb_005694_160 0.1010440423 - - conserved hypothetical protein [Ricinus communis]
9 Hb_086300_010 0.1023747365 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_000977_020 0.1024460134 - - beta-hexosaminidase, putative [Ricinus communis]
11 Hb_000031_180 0.1027631768 - - sarcosine oxidase, putative [Ricinus communis]
12 Hb_008536_020 0.1055294243 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
13 Hb_027472_060 0.1069378557 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
14 Hb_000500_240 0.1087965168 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005842_010 0.1094675008 - - nitrate transporter, putative [Ricinus communis]
16 Hb_000816_240 0.1098041058 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
17 Hb_000904_120 0.1099116684 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000520_040 0.1103892386 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_015561_010 0.1116343545 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004032_280 0.1121387422 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]

Gene co-expression network

sample Hb_006075_030 Hb_006075_030 Hb_002374_180 Hb_002374_180 Hb_006075_030--Hb_002374_180 Hb_006831_090 Hb_006831_090 Hb_006075_030--Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_006075_030--Hb_000329_780 Hb_002600_170 Hb_002600_170 Hb_006075_030--Hb_002600_170 Hb_005532_030 Hb_005532_030 Hb_006075_030--Hb_005532_030 Hb_002572_040 Hb_002572_040 Hb_006075_030--Hb_002572_040 Hb_002374_180--Hb_002600_170 Hb_002374_180--Hb_006831_090 Hb_002374_180--Hb_000329_780 Hb_002374_180--Hb_005532_030 Hb_008536_020 Hb_008536_020 Hb_002374_180--Hb_008536_020 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_006831_090--Hb_004032_280 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_000329_780--Hb_002600_170 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_002600_170--Hb_008536_020 Hb_002600_170--Hb_004032_280 Hb_002600_170--Hb_005532_030 Hb_002336_050 Hb_002336_050 Hb_005532_030--Hb_002336_050 Hb_005532_030--Hb_006831_090 Hb_086300_010 Hb_086300_010 Hb_005532_030--Hb_086300_010 Hb_005532_030--Hb_000329_780 Hb_002150_090 Hb_002150_090 Hb_002572_040--Hb_002150_090 Hb_001541_130 Hb_001541_130 Hb_002572_040--Hb_001541_130 Hb_006242_050 Hb_006242_050 Hb_002572_040--Hb_006242_050 Hb_000599_150 Hb_000599_150 Hb_002572_040--Hb_000599_150 Hb_027472_060 Hb_027472_060 Hb_002572_040--Hb_027472_060 Hb_001095_020 Hb_001095_020 Hb_002572_040--Hb_001095_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.12064 1.11527 1.42995 0.0255967 0.0447876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.155154 1.87173

CAGE analysis