Hb_005532_030

Information

Type -
Description -
Location Contig5532: 12887-14385
Sequence    

Annotation

kegg
ID rcu:RCOM_1621620
description DNA binding protein, putative
nr
ID XP_002512116.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9M2D8
description Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1
trembl
ID B9RCW8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1621620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48334: 13110-13905 , PASA_asmbl_48335: 14142-14371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005532_030 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002374_180 0.0663123721 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
3 Hb_002336_050 0.0702372471 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_002600_170 0.0704248648 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006831_090 0.0712226442 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
6 Hb_086300_010 0.0750571334 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_000329_780 0.0779104169 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
8 Hb_000031_180 0.0794930721 - - sarcosine oxidase, putative [Ricinus communis]
9 Hb_020956_030 0.0809293276 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
10 Hb_008536_020 0.0813731492 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
11 Hb_003162_060 0.0813825961 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
12 Hb_001141_100 0.0841997514 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
13 Hb_147028_010 0.0861449258 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
14 Hb_002246_030 0.0871505713 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_004032_280 0.0873634393 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
16 Hb_026549_060 0.0935795522 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_001541_200 0.0939864046 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
18 Hb_000904_120 0.0942574607 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000232_040 0.0949800722 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
20 Hb_000803_080 0.0967563105 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005532_030 Hb_005532_030 Hb_002374_180 Hb_002374_180 Hb_005532_030--Hb_002374_180 Hb_002336_050 Hb_002336_050 Hb_005532_030--Hb_002336_050 Hb_002600_170 Hb_002600_170 Hb_005532_030--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_005532_030--Hb_006831_090 Hb_086300_010 Hb_086300_010 Hb_005532_030--Hb_086300_010 Hb_000329_780 Hb_000329_780 Hb_005532_030--Hb_000329_780 Hb_002374_180--Hb_002600_170 Hb_002374_180--Hb_006831_090 Hb_002374_180--Hb_000329_780 Hb_006075_030 Hb_006075_030 Hb_002374_180--Hb_006075_030 Hb_008536_020 Hb_008536_020 Hb_002374_180--Hb_008536_020 Hb_004563_010 Hb_004563_010 Hb_002336_050--Hb_004563_010 Hb_002336_050--Hb_008536_020 Hb_002336_050--Hb_006831_090 Hb_002336_050--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_002336_050--Hb_004032_280 Hb_002600_170--Hb_006831_090 Hb_002600_170--Hb_008536_020 Hb_002600_170--Hb_000329_780 Hb_002600_170--Hb_004032_280 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_004032_280 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_147028_010 Hb_147028_010 Hb_086300_010--Hb_147028_010 Hb_020956_030 Hb_020956_030 Hb_086300_010--Hb_020956_030 Hb_003162_060 Hb_003162_060 Hb_086300_010--Hb_003162_060 Hb_028491_010 Hb_028491_010 Hb_086300_010--Hb_028491_010 Hb_033681_030 Hb_033681_030 Hb_086300_010--Hb_033681_030 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131182 0.61245 5.25807 7.49907 0.110637 0.041621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.294712 11.0989

CAGE analysis