Hb_033681_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig33681: 11937-15176
Sequence    

Annotation

kegg
ID tcc:TCM_031055
description Leucine-rich repeat containing protein
nr
ID XP_007021012.1
description Leucine-rich repeat containing protein [Theobroma cacao]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A061F749
description Leucine-rich repeat containing protein OS=Theobroma cacao GN=TCM_031055 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35268: 12689-12946 , PASA_asmbl_35269: 13045-13218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033681_030 0.0 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
2 Hb_002338_040 0.0694606217 - - conserved hypothetical protein [Ricinus communis]
3 Hb_086300_010 0.0773533811 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_008195_090 0.0784592821 - - conserved hypothetical protein [Ricinus communis]
5 Hb_020956_030 0.0859323203 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
6 Hb_000477_090 0.0899013101 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
7 Hb_005483_040 0.0904412298 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
8 Hb_002329_050 0.0904969354 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003162_060 0.0922249038 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
10 Hb_003151_020 0.0962237897 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_006291_050 0.0965431553 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_002149_060 0.097316341 - - catalytic, putative [Ricinus communis]
13 Hb_000268_050 0.0994709246 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
14 Hb_005062_100 0.1041776874 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
15 Hb_000739_280 0.1054347217 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_002805_280 0.1058097115 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
17 Hb_006573_240 0.105935576 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
18 Hb_001488_160 0.1062694395 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_004563_010 0.1063228823 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_003358_030 0.1065670641 - - ankyrin-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_033681_030 Hb_033681_030 Hb_002338_040 Hb_002338_040 Hb_033681_030--Hb_002338_040 Hb_086300_010 Hb_086300_010 Hb_033681_030--Hb_086300_010 Hb_008195_090 Hb_008195_090 Hb_033681_030--Hb_008195_090 Hb_020956_030 Hb_020956_030 Hb_033681_030--Hb_020956_030 Hb_000477_090 Hb_000477_090 Hb_033681_030--Hb_000477_090 Hb_005483_040 Hb_005483_040 Hb_033681_030--Hb_005483_040 Hb_002044_070 Hb_002044_070 Hb_002338_040--Hb_002044_070 Hb_002338_040--Hb_005483_040 Hb_002338_040--Hb_086300_010 Hb_002149_060 Hb_002149_060 Hb_002338_040--Hb_002149_060 Hb_002329_050 Hb_002329_050 Hb_002338_040--Hb_002329_050 Hb_147028_010 Hb_147028_010 Hb_086300_010--Hb_147028_010 Hb_086300_010--Hb_020956_030 Hb_003162_060 Hb_003162_060 Hb_086300_010--Hb_003162_060 Hb_028491_010 Hb_028491_010 Hb_086300_010--Hb_028491_010 Hb_005532_030 Hb_005532_030 Hb_086300_010--Hb_005532_030 Hb_002805_280 Hb_002805_280 Hb_008195_090--Hb_002805_280 Hb_003151_020 Hb_003151_020 Hb_008195_090--Hb_003151_020 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_029991_010 Hb_029991_010 Hb_008195_090--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_008195_090--Hb_002387_010 Hb_020956_030--Hb_003162_060 Hb_001541_200 Hb_001541_200 Hb_020956_030--Hb_001541_200 Hb_001433_090 Hb_001433_090 Hb_020956_030--Hb_001433_090 Hb_026549_060 Hb_026549_060 Hb_020956_030--Hb_026549_060 Hb_001657_020 Hb_001657_020 Hb_020956_030--Hb_001657_020 Hb_005539_150 Hb_005539_150 Hb_000477_090--Hb_005539_150 Hb_000477_090--Hb_008195_090 Hb_001894_100 Hb_001894_100 Hb_000477_090--Hb_001894_100 Hb_029386_010 Hb_029386_010 Hb_000477_090--Hb_029386_010 Hb_003358_030 Hb_003358_030 Hb_000477_090--Hb_003358_030 Hb_005483_040--Hb_002329_050 Hb_018487_040 Hb_018487_040 Hb_005483_040--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_005483_040--Hb_002250_040 Hb_000883_080 Hb_000883_080 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_011362_010 Hb_011362_010 Hb_005483_040--Hb_011362_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0815546 0.884107 1.62987 0.0279828 0.016321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0667484 3.48463

CAGE analysis