Hb_008195_090

Information

Type -
Description -
Location Contig8195: 98655-99916
Sequence    

Annotation

kegg
ID rcu:RCOM_0195620
description hypothetical protein
nr
ID XP_002532572.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2V3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0195620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59536: 82839-99860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008195_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002805_280 0.0652473759 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
3 Hb_003151_020 0.0663079569 - - Ankyrin repeat family protein, putative [Theobroma cacao]
4 Hb_004563_010 0.0708605331 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_029991_010 0.0732649476 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
6 Hb_002387_010 0.0741963777 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
7 Hb_033681_030 0.0784592821 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
8 Hb_131466_010 0.0787169282 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_000803_080 0.0818855076 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_086300_010 0.0818919779 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_000139_360 0.0822819935 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
12 Hb_004607_110 0.0823672381 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
13 Hb_006291_050 0.082956203 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_028491_010 0.0833788338 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
15 Hb_000477_090 0.0839289149 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
16 Hb_002042_210 0.0843341718 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
17 Hb_044478_010 0.0877571087 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
18 Hb_003162_060 0.0880551843 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_003913_120 0.0947025358 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
20 Hb_020956_030 0.0954675907 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_008195_090 Hb_008195_090 Hb_002805_280 Hb_002805_280 Hb_008195_090--Hb_002805_280 Hb_003151_020 Hb_003151_020 Hb_008195_090--Hb_003151_020 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_029991_010 Hb_029991_010 Hb_008195_090--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_008195_090--Hb_002387_010 Hb_033681_030 Hb_033681_030 Hb_008195_090--Hb_033681_030 Hb_002805_280--Hb_002387_010 Hb_002042_210 Hb_002042_210 Hb_002805_280--Hb_002042_210 Hb_003090_240 Hb_003090_240 Hb_002805_280--Hb_003090_240 Hb_004607_110 Hb_004607_110 Hb_002805_280--Hb_004607_110 Hb_002805_280--Hb_029991_010 Hb_001232_070 Hb_001232_070 Hb_003151_020--Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_003151_020--Hb_002391_340 Hb_001472_150 Hb_001472_150 Hb_003151_020--Hb_001472_150 Hb_006483_040 Hb_006483_040 Hb_003151_020--Hb_006483_040 Hb_000329_120 Hb_000329_120 Hb_003151_020--Hb_000329_120 Hb_002336_050 Hb_002336_050 Hb_004563_010--Hb_002336_050 Hb_012098_120 Hb_012098_120 Hb_004563_010--Hb_012098_120 Hb_004563_010--Hb_003151_020 Hb_004563_010--Hb_029991_010 Hb_004563_010--Hb_004607_110 Hb_131466_010 Hb_131466_010 Hb_029991_010--Hb_131466_010 Hb_029991_010--Hb_004607_110 Hb_001307_050 Hb_001307_050 Hb_029991_010--Hb_001307_050 Hb_028491_010 Hb_028491_010 Hb_029991_010--Hb_028491_010 Hb_000179_010 Hb_000179_010 Hb_029991_010--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_029991_010--Hb_000497_050 Hb_002387_010--Hb_004607_110 Hb_044478_010 Hb_044478_010 Hb_002387_010--Hb_044478_010 Hb_002387_010--Hb_029991_010 Hb_003913_120 Hb_003913_120 Hb_002387_010--Hb_003913_120 Hb_002338_040 Hb_002338_040 Hb_033681_030--Hb_002338_040 Hb_086300_010 Hb_086300_010 Hb_033681_030--Hb_086300_010 Hb_020956_030 Hb_020956_030 Hb_033681_030--Hb_020956_030 Hb_000477_090 Hb_000477_090 Hb_033681_030--Hb_000477_090 Hb_005483_040 Hb_005483_040 Hb_033681_030--Hb_005483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144989 1.43397 37.2543 49.9816 0.175566 0.133661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309057 0 0.141316 1.89406 105.998

CAGE analysis