Hb_003913_120

Information

Type transcription factor
Description TF Family: MYB
Location Contig3913: 100301-101714
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09430g
description POPTRDRAFT_575224; hypothetical protein
nr
ID XP_002321627.1
description hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9IEX5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09430g PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein odorant1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39209: 100439-101721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_120 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
2 Hb_000803_080 0.0561295675 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_004837_010 0.0620042656 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
4 Hb_003734_070 0.0638230029 - - chlorophyll A/B binding protein, putative [Ricinus communis]
5 Hb_004607_110 0.06854991 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
6 Hb_004807_010 0.0713358985 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
7 Hb_000418_130 0.072282627 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
8 Hb_029991_010 0.0723318237 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
9 Hb_001735_040 0.0735299917 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
10 Hb_000179_010 0.0744113591 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
11 Hb_028491_010 0.0747995075 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
12 Hb_004338_050 0.0757324803 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
13 Hb_085682_010 0.0777837002 - - -
14 Hb_004032_400 0.0781179568 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
15 Hb_033187_010 0.0792654722 - - epoxide hydrolase, putative [Ricinus communis]
16 Hb_001307_050 0.0800543298 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
17 Hb_009233_020 0.0807880756 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
18 Hb_002387_010 0.0809577642 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
19 Hb_000497_050 0.0824280449 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
20 Hb_000077_020 0.0832678066 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003913_120 Hb_003913_120 Hb_000803_080 Hb_000803_080 Hb_003913_120--Hb_000803_080 Hb_004837_010 Hb_004837_010 Hb_003913_120--Hb_004837_010 Hb_003734_070 Hb_003734_070 Hb_003913_120--Hb_003734_070 Hb_004607_110 Hb_004607_110 Hb_003913_120--Hb_004607_110 Hb_004807_010 Hb_004807_010 Hb_003913_120--Hb_004807_010 Hb_000418_130 Hb_000418_130 Hb_003913_120--Hb_000418_130 Hb_000803_080--Hb_004807_010 Hb_028491_010 Hb_028491_010 Hb_000803_080--Hb_028491_010 Hb_000803_080--Hb_004607_110 Hb_147028_010 Hb_147028_010 Hb_000803_080--Hb_147028_010 Hb_012098_120 Hb_012098_120 Hb_000803_080--Hb_012098_120 Hb_000179_010 Hb_000179_010 Hb_004837_010--Hb_000179_010 Hb_004032_400 Hb_004032_400 Hb_004837_010--Hb_004032_400 Hb_001307_050 Hb_001307_050 Hb_004837_010--Hb_001307_050 Hb_158001_010 Hb_158001_010 Hb_004837_010--Hb_158001_010 Hb_085682_010 Hb_085682_010 Hb_004837_010--Hb_085682_010 Hb_146255_030 Hb_146255_030 Hb_004837_010--Hb_146255_030 Hb_000077_020 Hb_000077_020 Hb_003734_070--Hb_000077_020 Hb_068580_010 Hb_068580_010 Hb_003734_070--Hb_068580_010 Hb_004880_020 Hb_004880_020 Hb_003734_070--Hb_004880_020 Hb_009588_010 Hb_009588_010 Hb_003734_070--Hb_009588_010 Hb_009233_020 Hb_009233_020 Hb_003734_070--Hb_009233_020 Hb_009225_060 Hb_009225_060 Hb_003734_070--Hb_009225_060 Hb_004607_110--Hb_028491_010 Hb_029991_010 Hb_029991_010 Hb_004607_110--Hb_029991_010 Hb_001141_100 Hb_001141_100 Hb_004607_110--Hb_001141_100 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_001735_040 Hb_001735_040 Hb_004607_110--Hb_001735_040 Hb_004807_010--Hb_012098_120 Hb_000329_120 Hb_000329_120 Hb_004807_010--Hb_000329_120 Hb_005839_040 Hb_005839_040 Hb_004807_010--Hb_005839_040 Hb_185811_010 Hb_185811_010 Hb_004807_010--Hb_185811_010 Hb_004807_010--Hb_009233_020 Hb_000418_130--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_000418_130--Hb_002028_020 Hb_000042_280 Hb_000042_280 Hb_000418_130--Hb_000042_280 Hb_000418_130--Hb_004032_400 Hb_001488_230 Hb_001488_230 Hb_000418_130--Hb_001488_230 Hb_002752_020 Hb_002752_020 Hb_000418_130--Hb_002752_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.19146 8.10419 7.93557 0 0.0179301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0785561 0.0308973 0 0.049484 15.1772

CAGE analysis