Hb_012098_120

Information

Type -
Description -
Location Contig12098: 78685-79503
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01400g
description POPTRDRAFT_414178; GNS1/SUR4 membrane family protein
nr
ID XP_012071354.1
description PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
swissprot
ID Q9SYY4
description Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana GN=HOS3 PE=2 SV=1
trembl
ID A0A067L308
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05042 PE=4 SV=1
Gene Ontology
ID GO:0016021
description elongation of fatty acids protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06459: 79105-81325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_120 0.0 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
2 Hb_004807_010 0.0442665376 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
3 Hb_005839_040 0.0644187956 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
4 Hb_185811_010 0.0683811786 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
5 Hb_000803_080 0.0690582329 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_001345_050 0.069192092 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
7 Hb_072771_010 0.0692925569 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
8 Hb_154038_010 0.0709780202 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001472_150 0.0724561504 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
10 Hb_006483_040 0.0739227365 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
11 Hb_000329_120 0.0753933003 - - 21 kDa protein precursor, putative [Ricinus communis]
12 Hb_008453_050 0.0783574185 - - PREDICTED: peroxidase 64 [Jatropha curcas]
13 Hb_000917_300 0.0786806177 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
14 Hb_004563_010 0.0798405228 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_001981_050 0.0823357309 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
16 Hb_000318_310 0.0842860206 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
17 Hb_001232_070 0.0853654771 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002326_010 0.0856186228 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
19 Hb_064445_020 0.0869623447 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
20 Hb_144550_010 0.0877092591 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012098_120 Hb_012098_120 Hb_004807_010 Hb_004807_010 Hb_012098_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_012098_120--Hb_005839_040 Hb_185811_010 Hb_185811_010 Hb_012098_120--Hb_185811_010 Hb_000803_080 Hb_000803_080 Hb_012098_120--Hb_000803_080 Hb_001345_050 Hb_001345_050 Hb_012098_120--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_012098_120--Hb_072771_010 Hb_000329_120 Hb_000329_120 Hb_004807_010--Hb_000329_120 Hb_004807_010--Hb_005839_040 Hb_004807_010--Hb_185811_010 Hb_004807_010--Hb_000803_080 Hb_009233_020 Hb_009233_020 Hb_004807_010--Hb_009233_020 Hb_154038_010 Hb_154038_010 Hb_005839_040--Hb_154038_010 Hb_006483_040 Hb_006483_040 Hb_005839_040--Hb_006483_040 Hb_008453_050 Hb_008453_050 Hb_005839_040--Hb_008453_050 Hb_005839_040--Hb_072771_010 Hb_005839_040--Hb_001345_050 Hb_001472_150 Hb_001472_150 Hb_005839_040--Hb_001472_150 Hb_001981_050 Hb_001981_050 Hb_185811_010--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_185811_010--Hb_000318_310 Hb_185811_010--Hb_001345_050 Hb_185811_010--Hb_072771_010 Hb_003855_060 Hb_003855_060 Hb_185811_010--Hb_003855_060 Hb_003913_120 Hb_003913_120 Hb_000803_080--Hb_003913_120 Hb_028491_010 Hb_028491_010 Hb_000803_080--Hb_028491_010 Hb_004607_110 Hb_004607_110 Hb_000803_080--Hb_004607_110 Hb_147028_010 Hb_147028_010 Hb_000803_080--Hb_147028_010 Hb_001345_050--Hb_072771_010 Hb_001345_050--Hb_154038_010 Hb_000224_190 Hb_000224_190 Hb_001345_050--Hb_000224_190 Hb_001345_050--Hb_008453_050 Hb_002326_010 Hb_002326_010 Hb_001345_050--Hb_002326_010 Hb_001926_080 Hb_001926_080 Hb_001345_050--Hb_001926_080 Hb_072771_010--Hb_154038_010 Hb_072771_010--Hb_000224_190 Hb_072771_010--Hb_008453_050 Hb_072771_010--Hb_002326_010 Hb_072771_010--Hb_001926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142252 0.406236 14.237 21.5421 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 32.9153

CAGE analysis