Hb_001926_080

Information

Type -
Description -
Location Contig1926: 75899-77058
Sequence    

Annotation

kegg
ID mdm:103454919
description uncharacterized LOC103454919
nr
ID XP_008392737.1
description PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A0A9CHE7
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19197: 76599-76974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001926_080 0.0 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
2 Hb_002391_010 0.0104638557 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
3 Hb_000224_190 0.0262717595 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000485_100 0.0323440809 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
5 Hb_072771_010 0.0440545006 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
6 Hb_001345_050 0.0440711727 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
7 Hb_002326_010 0.0482111689 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
8 Hb_024723_010 0.0538937757 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
9 Hb_000111_490 0.0614190353 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008453_050 0.0615031422 - - PREDICTED: peroxidase 64 [Jatropha curcas]
11 Hb_154038_010 0.0660218237 - - cytochrome P450, putative [Ricinus communis]
12 Hb_185811_010 0.0680893282 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_001863_470 0.0713814852 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
14 Hb_001981_050 0.0717010903 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
15 Hb_064445_020 0.0736865768 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
16 Hb_006895_010 0.0746116083 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
17 Hb_001593_040 0.0769719887 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_000917_300 0.0784661073 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
19 Hb_000326_120 0.0806559616 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
20 Hb_006483_040 0.0842563457 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]

Gene co-expression network

sample Hb_001926_080 Hb_001926_080 Hb_002391_010 Hb_002391_010 Hb_001926_080--Hb_002391_010 Hb_000224_190 Hb_000224_190 Hb_001926_080--Hb_000224_190 Hb_000485_100 Hb_000485_100 Hb_001926_080--Hb_000485_100 Hb_072771_010 Hb_072771_010 Hb_001926_080--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_001926_080--Hb_001345_050 Hb_002326_010 Hb_002326_010 Hb_001926_080--Hb_002326_010 Hb_002391_010--Hb_000485_100 Hb_002391_010--Hb_000224_190 Hb_024723_010 Hb_024723_010 Hb_002391_010--Hb_024723_010 Hb_000111_490 Hb_000111_490 Hb_002391_010--Hb_000111_490 Hb_002391_010--Hb_001345_050 Hb_000224_190--Hb_002326_010 Hb_000224_190--Hb_072771_010 Hb_000224_190--Hb_001345_050 Hb_008453_050 Hb_008453_050 Hb_000224_190--Hb_008453_050 Hb_000485_100--Hb_024723_010 Hb_000485_100--Hb_000111_490 Hb_000485_100--Hb_000224_190 Hb_006895_010 Hb_006895_010 Hb_000485_100--Hb_006895_010 Hb_072771_010--Hb_001345_050 Hb_154038_010 Hb_154038_010 Hb_072771_010--Hb_154038_010 Hb_072771_010--Hb_008453_050 Hb_072771_010--Hb_002326_010 Hb_001345_050--Hb_154038_010 Hb_001345_050--Hb_008453_050 Hb_001345_050--Hb_002326_010 Hb_064445_020 Hb_064445_020 Hb_002326_010--Hb_064445_020 Hb_002326_010--Hb_008453_050 Hb_001593_040 Hb_001593_040 Hb_002326_010--Hb_001593_040 Hb_002326_010--Hb_154038_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0688716 0.153681 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.16679

CAGE analysis