Hb_000224_190

Information

Type -
Description -
Location Contig224: 146050-148527
Sequence    

Annotation

kegg
ID rcu:RCOM_0511210
description zinc finger protein, putative
nr
ID XP_002528958.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q67ZI9
description GDSL esterase/lipase At2g42990 OS=Arabidopsis thaliana GN=At2g42990 PE=2 SV=1
trembl
ID B9SSI9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0511210 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at2g42990-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23308: 145998-148656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_190 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002326_010 0.023147224 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
3 Hb_001926_080 0.0262717595 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
4 Hb_002391_010 0.0342194468 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
5 Hb_072771_010 0.0354008391 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
6 Hb_001345_050 0.0361289516 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
7 Hb_008453_050 0.0407805477 - - PREDICTED: peroxidase 64 [Jatropha curcas]
8 Hb_154038_010 0.0461135225 - - cytochrome P450, putative [Ricinus communis]
9 Hb_064445_020 0.0486749441 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
10 Hb_000485_100 0.050776802 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
11 Hb_001593_040 0.0514623492 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_001863_470 0.0606967449 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
13 Hb_006483_040 0.0635888142 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
14 Hb_003025_170 0.0705843908 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
15 Hb_132880_010 0.0732687812 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
16 Hb_006895_010 0.0750707452 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
17 Hb_185811_010 0.0755234993 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_005839_040 0.0765704157 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
19 Hb_024723_010 0.078727032 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
20 Hb_000917_300 0.0801253545 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]

Gene co-expression network

sample Hb_000224_190 Hb_000224_190 Hb_002326_010 Hb_002326_010 Hb_000224_190--Hb_002326_010 Hb_001926_080 Hb_001926_080 Hb_000224_190--Hb_001926_080 Hb_002391_010 Hb_002391_010 Hb_000224_190--Hb_002391_010 Hb_072771_010 Hb_072771_010 Hb_000224_190--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_000224_190--Hb_001345_050 Hb_008453_050 Hb_008453_050 Hb_000224_190--Hb_008453_050 Hb_064445_020 Hb_064445_020 Hb_002326_010--Hb_064445_020 Hb_002326_010--Hb_008453_050 Hb_001593_040 Hb_001593_040 Hb_002326_010--Hb_001593_040 Hb_154038_010 Hb_154038_010 Hb_002326_010--Hb_154038_010 Hb_002326_010--Hb_072771_010 Hb_001926_080--Hb_002391_010 Hb_000485_100 Hb_000485_100 Hb_001926_080--Hb_000485_100 Hb_001926_080--Hb_072771_010 Hb_001926_080--Hb_001345_050 Hb_001926_080--Hb_002326_010 Hb_002391_010--Hb_000485_100 Hb_024723_010 Hb_024723_010 Hb_002391_010--Hb_024723_010 Hb_000111_490 Hb_000111_490 Hb_002391_010--Hb_000111_490 Hb_002391_010--Hb_001345_050 Hb_072771_010--Hb_001345_050 Hb_072771_010--Hb_154038_010 Hb_072771_010--Hb_008453_050 Hb_001345_050--Hb_154038_010 Hb_001345_050--Hb_008453_050 Hb_001345_050--Hb_002326_010 Hb_008453_050--Hb_154038_010 Hb_008453_050--Hb_064445_020 Hb_006483_040 Hb_006483_040 Hb_008453_050--Hb_006483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 74.6581 169.8 0 0.0224177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 206.893

CAGE analysis