Hb_001593_040

Information

Type -
Description -
Location Contig1593: 74689-75571
Sequence    

Annotation

kegg
ID rcu:RCOM_0501760
description short chain alcohol dehydrogenase, putative (EC:1.1.1.53)
nr
ID XP_012072773.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL8
description Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1
trembl
ID A0A067L0K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06967 PE=4 SV=1
Gene Ontology
ID GO:0047044
description short chain alcohol

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14131: 74582-75792
cDNA
(Sanger)
(ID:Location)		 019_N17.ab1: 74654-75441

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001593_040 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_064445_020 0.0138399157 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
3 Hb_002326_010 0.0294407224 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
4 Hb_008453_050 0.0372286255 - - PREDICTED: peroxidase 64 [Jatropha curcas]
5 Hb_000077_040 0.0403070507 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
6 Hb_154038_010 0.0407490682 - - cytochrome P450, putative [Ricinus communis]
7 Hb_104014_020 0.0423803706 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
8 Hb_003025_170 0.0437120084 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
9 Hb_006483_040 0.0442948554 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
10 Hb_000115_030 0.0489937658 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
11 Hb_000224_190 0.0514623492 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001472_150 0.0584833125 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
13 Hb_072771_010 0.0621155145 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
14 Hb_001345_050 0.0633461042 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
15 Hb_002973_060 0.0649237005 - - conserved hypothetical protein [Ricinus communis]
16 Hb_096907_010 0.0684861453 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
17 Hb_132880_010 0.0694910068 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
18 Hb_001437_170 0.0701116582 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
19 Hb_144550_010 0.0723717513 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
20 Hb_001863_470 0.0726829507 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]

Gene co-expression network

sample Hb_001593_040 Hb_001593_040 Hb_064445_020 Hb_064445_020 Hb_001593_040--Hb_064445_020 Hb_002326_010 Hb_002326_010 Hb_001593_040--Hb_002326_010 Hb_008453_050 Hb_008453_050 Hb_001593_040--Hb_008453_050 Hb_000077_040 Hb_000077_040 Hb_001593_040--Hb_000077_040 Hb_154038_010 Hb_154038_010 Hb_001593_040--Hb_154038_010 Hb_104014_020 Hb_104014_020 Hb_001593_040--Hb_104014_020 Hb_064445_020--Hb_002326_010 Hb_064445_020--Hb_154038_010 Hb_064445_020--Hb_008453_050 Hb_006483_040 Hb_006483_040 Hb_064445_020--Hb_006483_040 Hb_000224_190 Hb_000224_190 Hb_064445_020--Hb_000224_190 Hb_002326_010--Hb_000224_190 Hb_002326_010--Hb_008453_050 Hb_002326_010--Hb_154038_010 Hb_072771_010 Hb_072771_010 Hb_002326_010--Hb_072771_010 Hb_008453_050--Hb_154038_010 Hb_008453_050--Hb_006483_040 Hb_008453_050--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_008453_050--Hb_001345_050 Hb_000077_040--Hb_104014_020 Hb_000115_030 Hb_000115_030 Hb_000077_040--Hb_000115_030 Hb_003025_170 Hb_003025_170 Hb_000077_040--Hb_003025_170 Hb_002973_060 Hb_002973_060 Hb_000077_040--Hb_002973_060 Hb_000077_040--Hb_064445_020 Hb_154038_010--Hb_006483_040 Hb_154038_010--Hb_072771_010 Hb_154038_010--Hb_001345_050 Hb_104014_020--Hb_003025_170 Hb_104014_020--Hb_002973_060 Hb_104014_020--Hb_000115_030 Hb_003786_030 Hb_003786_030 Hb_104014_020--Hb_003786_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.396802 0.951379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.4491

CAGE analysis