Hb_003025_170

Information

Type -
Description -
Location Contig3025: 153108-154227
Sequence    

Annotation

kegg
ID fve:101295503
description putative pentatricopeptide repeat-containing protein At5g59900-like
nr
ID XP_012064995.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
swissprot
ID Q9FJE6
description Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
trembl
ID W9SER3
description Uncharacterized protein OS=Morus notabilis GN=L484_000629 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31921: 153971-154217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_170 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
2 Hb_104014_020 0.0184501177 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
3 Hb_000077_040 0.0420082037 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
4 Hb_001593_040 0.0437120084 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_002973_060 0.0546872057 - - conserved hypothetical protein [Ricinus communis]
6 Hb_064445_020 0.0572167589 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
7 Hb_002326_010 0.0584274804 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
8 Hb_000115_030 0.0624163189 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
9 Hb_003786_030 0.0649305641 - - BnaUnng00830D [Brassica napus]
10 Hb_151290_010 0.0671848594 - - unnamed protein product [Vitis vinifera]
11 Hb_000224_190 0.0705843908 - - zinc finger protein, putative [Ricinus communis]
12 Hb_008453_050 0.0736314267 - - PREDICTED: peroxidase 64 [Jatropha curcas]
13 Hb_000023_100 0.0739597995 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
14 Hb_000724_040 0.0779567813 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
15 Hb_132880_010 0.0792700296 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
16 Hb_001097_170 0.0798342176 - - PREDICTED: protein NDR1 [Jatropha curcas]
17 Hb_094439_040 0.0809401079 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
18 Hb_006895_010 0.0817009327 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
19 Hb_154038_010 0.0821772394 - - cytochrome P450, putative [Ricinus communis]
20 Hb_144550_010 0.08478597 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003025_170 Hb_003025_170 Hb_104014_020 Hb_104014_020 Hb_003025_170--Hb_104014_020 Hb_000077_040 Hb_000077_040 Hb_003025_170--Hb_000077_040 Hb_001593_040 Hb_001593_040 Hb_003025_170--Hb_001593_040 Hb_002973_060 Hb_002973_060 Hb_003025_170--Hb_002973_060 Hb_064445_020 Hb_064445_020 Hb_003025_170--Hb_064445_020 Hb_002326_010 Hb_002326_010 Hb_003025_170--Hb_002326_010 Hb_104014_020--Hb_000077_040 Hb_104014_020--Hb_002973_060 Hb_104014_020--Hb_001593_040 Hb_000115_030 Hb_000115_030 Hb_104014_020--Hb_000115_030 Hb_003786_030 Hb_003786_030 Hb_104014_020--Hb_003786_030 Hb_000077_040--Hb_001593_040 Hb_000077_040--Hb_000115_030 Hb_000077_040--Hb_002973_060 Hb_000077_040--Hb_064445_020 Hb_001593_040--Hb_064445_020 Hb_001593_040--Hb_002326_010 Hb_008453_050 Hb_008453_050 Hb_001593_040--Hb_008453_050 Hb_154038_010 Hb_154038_010 Hb_001593_040--Hb_154038_010 Hb_000724_040 Hb_000724_040 Hb_002973_060--Hb_000724_040 Hb_002973_060--Hb_003786_030 Hb_002973_060--Hb_000115_030 Hb_005228_050 Hb_005228_050 Hb_002973_060--Hb_005228_050 Hb_064445_020--Hb_002326_010 Hb_064445_020--Hb_154038_010 Hb_064445_020--Hb_008453_050 Hb_006483_040 Hb_006483_040 Hb_064445_020--Hb_006483_040 Hb_000224_190 Hb_000224_190 Hb_064445_020--Hb_000224_190 Hb_002326_010--Hb_000224_190 Hb_002326_010--Hb_008453_050 Hb_002326_010--Hb_154038_010 Hb_072771_010 Hb_072771_010 Hb_002326_010--Hb_072771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0200398 0.0672697 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.092369

CAGE analysis