Hb_006483_040

Information

Type -
Description -
Location Contig6483: 45641-47144
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10910g
description POPTRDRAFT_764530; hypothetical protein
nr
ID XP_012079239.1
description PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12405 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_040 0.0 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
2 Hb_154038_010 0.0182863948 - - cytochrome P450, putative [Ricinus communis]
3 Hb_064445_020 0.0309244341 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
4 Hb_008453_050 0.0336318289 - - PREDICTED: peroxidase 64 [Jatropha curcas]
5 Hb_001232_070 0.0375809008 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001472_150 0.0379463073 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
7 Hb_002391_340 0.0429875289 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
8 Hb_001593_040 0.0442948554 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_002326_010 0.0459285184 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
10 Hb_072771_010 0.046656959 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
11 Hb_001345_050 0.0475116035 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
12 Hb_000329_120 0.0503088246 - - 21 kDa protein precursor, putative [Ricinus communis]
13 Hb_005839_040 0.0508872423 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
14 Hb_001437_170 0.0630450048 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
15 Hb_000224_190 0.0635888142 - - zinc finger protein, putative [Ricinus communis]
16 Hb_096907_010 0.065942859 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
17 Hb_003151_020 0.0692480429 - - Ankyrin repeat family protein, putative [Theobroma cacao]
18 Hb_000115_030 0.0698743055 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
19 Hb_001863_470 0.0707899183 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
20 Hb_000160_120 0.07315949 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006483_040 Hb_006483_040 Hb_154038_010 Hb_154038_010 Hb_006483_040--Hb_154038_010 Hb_064445_020 Hb_064445_020 Hb_006483_040--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_006483_040--Hb_008453_050 Hb_001232_070 Hb_001232_070 Hb_006483_040--Hb_001232_070 Hb_001472_150 Hb_001472_150 Hb_006483_040--Hb_001472_150 Hb_002391_340 Hb_002391_340 Hb_006483_040--Hb_002391_340 Hb_154038_010--Hb_008453_050 Hb_154038_010--Hb_064445_020 Hb_072771_010 Hb_072771_010 Hb_154038_010--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_154038_010--Hb_001345_050 Hb_002326_010 Hb_002326_010 Hb_154038_010--Hb_002326_010 Hb_001593_040 Hb_001593_040 Hb_064445_020--Hb_001593_040 Hb_064445_020--Hb_002326_010 Hb_064445_020--Hb_008453_050 Hb_000224_190 Hb_000224_190 Hb_064445_020--Hb_000224_190 Hb_008453_050--Hb_002326_010 Hb_008453_050--Hb_072771_010 Hb_008453_050--Hb_001345_050 Hb_001232_070--Hb_002391_340 Hb_000329_120 Hb_000329_120 Hb_001232_070--Hb_000329_120 Hb_001232_070--Hb_001472_150 Hb_065774_010 Hb_065774_010 Hb_001232_070--Hb_065774_010 Hb_001437_170 Hb_001437_170 Hb_001232_070--Hb_001437_170 Hb_001472_150--Hb_002391_340 Hb_001472_150--Hb_154038_010 Hb_001472_150--Hb_064445_020 Hb_001472_150--Hb_008453_050 Hb_002391_340--Hb_065774_010 Hb_002391_340--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_002391_340--Hb_096907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0868679 0.151196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.255706

CAGE analysis