Hb_001345_050

Information

Type -
Description -
Location Contig1345: 62953-63696
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14480g
description hypothetical protein
nr
ID XP_006375506.1
description hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
swissprot
ID Q5F4C0
description Voltage-gated hydrogen channel 1 OS=Gallus gallus GN=HVCN1 PE=2 SV=1
trembl
ID B9NEP4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14480g PE=4 SV=1
Gene Ontology
ID GO:0009832
description voltage-gated hydrogen channel 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001345_050 0.0 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
2 Hb_072771_010 0.001234302 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
3 Hb_154038_010 0.0310372227 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000224_190 0.0361289516 - - zinc finger protein, putative [Ricinus communis]
5 Hb_008453_050 0.0372052181 - - PREDICTED: peroxidase 64 [Jatropha curcas]
6 Hb_002326_010 0.038930838 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
7 Hb_001926_080 0.0440711727 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
8 Hb_006483_040 0.0475116035 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
9 Hb_064445_020 0.0528512803 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
10 Hb_002391_010 0.054447422 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
11 Hb_005839_040 0.0553305522 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
12 Hb_001863_470 0.0605555594 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
13 Hb_185811_010 0.0616337071 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
14 Hb_001593_040 0.0633461042 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_004807_010 0.0646002679 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
16 Hb_012098_120 0.069192092 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
17 Hb_000329_120 0.0695444868 - - 21 kDa protein precursor, putative [Ricinus communis]
18 Hb_001472_150 0.0733820085 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
19 Hb_001981_050 0.0755969541 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
20 Hb_000485_100 0.0762925258 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]

Gene co-expression network

sample Hb_001345_050 Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_001345_050--Hb_072771_010 Hb_154038_010 Hb_154038_010 Hb_001345_050--Hb_154038_010 Hb_000224_190 Hb_000224_190 Hb_001345_050--Hb_000224_190 Hb_008453_050 Hb_008453_050 Hb_001345_050--Hb_008453_050 Hb_002326_010 Hb_002326_010 Hb_001345_050--Hb_002326_010 Hb_001926_080 Hb_001926_080 Hb_001345_050--Hb_001926_080 Hb_072771_010--Hb_154038_010 Hb_072771_010--Hb_000224_190 Hb_072771_010--Hb_008453_050 Hb_072771_010--Hb_002326_010 Hb_072771_010--Hb_001926_080 Hb_006483_040 Hb_006483_040 Hb_154038_010--Hb_006483_040 Hb_154038_010--Hb_008453_050 Hb_064445_020 Hb_064445_020 Hb_154038_010--Hb_064445_020 Hb_154038_010--Hb_002326_010 Hb_000224_190--Hb_002326_010 Hb_000224_190--Hb_001926_080 Hb_002391_010 Hb_002391_010 Hb_000224_190--Hb_002391_010 Hb_000224_190--Hb_008453_050 Hb_008453_050--Hb_002326_010 Hb_008453_050--Hb_064445_020 Hb_008453_050--Hb_006483_040 Hb_002326_010--Hb_064445_020 Hb_001593_040 Hb_001593_040 Hb_002326_010--Hb_001593_040 Hb_001926_080--Hb_002391_010 Hb_000485_100 Hb_000485_100 Hb_001926_080--Hb_000485_100 Hb_001926_080--Hb_002326_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0487149 0.0869083 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.116516

CAGE analysis