Hb_000115_030

Information

Type transcription factor
Description TF Family: LOB
Location Contig115: 24193-24987
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11950g
description POPTRDRAFT_419701; hypothetical protein
nr
ID XP_012082091.1
description PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
swissprot
ID Q9CA30
description LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1
trembl
ID A0A067JZK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18327 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04518: 24285-24920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_030 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
2 Hb_002973_060 0.031648632 - - conserved hypothetical protein [Ricinus communis]
3 Hb_096907_010 0.0352237998 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
4 Hb_000077_040 0.040925697 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
5 Hb_001437_170 0.0410048552 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
6 Hb_000160_120 0.0446886659 - - conserved hypothetical protein [Ricinus communis]
7 Hb_104014_020 0.0458960769 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
8 Hb_001593_040 0.0489937658 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_000724_040 0.0494489655 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
10 Hb_005228_050 0.0541951253 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
11 Hb_064445_020 0.0551247089 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
12 Hb_003786_030 0.0613419774 - - BnaUnng00830D [Brassica napus]
13 Hb_003025_170 0.0624163189 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
14 Hb_000540_080 0.0630739732 - - PREDICTED: laccase-17 [Jatropha curcas]
15 Hb_001472_150 0.0679067304 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
16 Hb_006483_040 0.0698743055 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
17 Hb_011362_010 0.0701547122 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
18 Hb_002391_340 0.0720271722 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
19 Hb_008453_050 0.0777226224 - - PREDICTED: peroxidase 64 [Jatropha curcas]
20 Hb_002326_010 0.0781662072 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]

Gene co-expression network

sample Hb_000115_030 Hb_000115_030 Hb_002973_060 Hb_002973_060 Hb_000115_030--Hb_002973_060 Hb_096907_010 Hb_096907_010 Hb_000115_030--Hb_096907_010 Hb_000077_040 Hb_000077_040 Hb_000115_030--Hb_000077_040 Hb_001437_170 Hb_001437_170 Hb_000115_030--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_000115_030--Hb_000160_120 Hb_104014_020 Hb_104014_020 Hb_000115_030--Hb_104014_020 Hb_000724_040 Hb_000724_040 Hb_002973_060--Hb_000724_040 Hb_003786_030 Hb_003786_030 Hb_002973_060--Hb_003786_030 Hb_005228_050 Hb_005228_050 Hb_002973_060--Hb_005228_050 Hb_002973_060--Hb_104014_020 Hb_002973_060--Hb_000077_040 Hb_096907_010--Hb_001437_170 Hb_096907_010--Hb_000160_120 Hb_003528_100 Hb_003528_100 Hb_096907_010--Hb_003528_100 Hb_002391_340 Hb_002391_340 Hb_096907_010--Hb_002391_340 Hb_065774_010 Hb_065774_010 Hb_096907_010--Hb_065774_010 Hb_000077_040--Hb_104014_020 Hb_001593_040 Hb_001593_040 Hb_000077_040--Hb_001593_040 Hb_003025_170 Hb_003025_170 Hb_000077_040--Hb_003025_170 Hb_064445_020 Hb_064445_020 Hb_000077_040--Hb_064445_020 Hb_001437_170--Hb_000160_120 Hb_001437_170--Hb_003528_100 Hb_001437_170--Hb_002391_340 Hb_001437_170--Hb_065774_010 Hb_000160_120--Hb_003528_100 Hb_000160_120--Hb_065774_010 Hb_000160_120--Hb_002391_340 Hb_104014_020--Hb_003025_170 Hb_104014_020--Hb_001593_040 Hb_104014_020--Hb_003786_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0243574 0.0618325 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.116516

CAGE analysis