Hb_000111_490

Information

Type -
Description -
Location Contig111: 425808-426936
Sequence    

Annotation

kegg
ID rcu:RCOM_0621340
description hypothetical protein
nr
ID XP_002525546.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHS7
description Sulfotransferase OS=Ricinus communis GN=RCOM_0621340 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_490 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_024723_010 0.0141060908 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
3 Hb_056506_040 0.0338942651 - - -
4 Hb_000485_100 0.0483361031 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
5 Hb_002391_010 0.053600003 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
6 Hb_068804_190 0.0585570976 - - kinase, putative [Ricinus communis]
7 Hb_001926_080 0.0614190353 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
8 Hb_000326_120 0.0628994397 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
9 Hb_005532_080 0.0667012254 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
10 Hb_010577_020 0.0695933258 - - -
11 Hb_001278_120 0.0797057405 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
12 Hb_000343_070 0.0824694775 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
13 Hb_007382_110 0.0832293105 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
14 Hb_001981_050 0.0845972091 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
15 Hb_011549_040 0.0871031772 - - -
16 Hb_000224_190 0.0871152903 - - zinc finger protein, putative [Ricinus communis]
17 Hb_004943_020 0.087901629 - - cationic amino acid transporter, putative [Ricinus communis]
18 Hb_166360_010 0.0879850892 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
19 Hb_000358_260 0.089919523 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
20 Hb_185811_010 0.0909488061 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_490 Hb_000111_490 Hb_024723_010 Hb_024723_010 Hb_000111_490--Hb_024723_010 Hb_056506_040 Hb_056506_040 Hb_000111_490--Hb_056506_040 Hb_000485_100 Hb_000485_100 Hb_000111_490--Hb_000485_100 Hb_002391_010 Hb_002391_010 Hb_000111_490--Hb_002391_010 Hb_068804_190 Hb_068804_190 Hb_000111_490--Hb_068804_190 Hb_001926_080 Hb_001926_080 Hb_000111_490--Hb_001926_080 Hb_024723_010--Hb_000485_100 Hb_024723_010--Hb_002391_010 Hb_024723_010--Hb_056506_040 Hb_024723_010--Hb_001926_080 Hb_000326_120 Hb_000326_120 Hb_024723_010--Hb_000326_120 Hb_010577_020 Hb_010577_020 Hb_056506_040--Hb_010577_020 Hb_056506_040--Hb_068804_190 Hb_005532_080 Hb_005532_080 Hb_056506_040--Hb_005532_080 Hb_011549_040 Hb_011549_040 Hb_056506_040--Hb_011549_040 Hb_000485_100--Hb_002391_010 Hb_000485_100--Hb_001926_080 Hb_000224_190 Hb_000224_190 Hb_000485_100--Hb_000224_190 Hb_006895_010 Hb_006895_010 Hb_000485_100--Hb_006895_010 Hb_002391_010--Hb_001926_080 Hb_002391_010--Hb_000224_190 Hb_001345_050 Hb_001345_050 Hb_002391_010--Hb_001345_050 Hb_068804_190--Hb_005532_080 Hb_166360_010 Hb_166360_010 Hb_068804_190--Hb_166360_010 Hb_068804_190--Hb_011549_040 Hb_068804_190--Hb_010577_020 Hb_001926_080--Hb_000224_190 Hb_072771_010 Hb_072771_010 Hb_001926_080--Hb_072771_010 Hb_001926_080--Hb_001345_050 Hb_002326_010 Hb_002326_010 Hb_001926_080--Hb_002326_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.182233 0.412707 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.331512

CAGE analysis