Hb_010577_020

Information

Type -
Description -
Location Contig10577: 30950-31469
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010577_020 0.0 - - -
2 Hb_056506_040 0.0385876526 - - -
3 Hb_005833_010 0.0577336048 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
4 Hb_000358_260 0.0585173411 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
5 Hb_011549_040 0.0618935764 - - -
6 Hb_068804_190 0.0619701039 - - kinase, putative [Ricinus communis]
7 Hb_000111_490 0.0695933258 - - conserved hypothetical protein [Ricinus communis]
8 Hb_126714_010 0.0775540638 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
9 Hb_006588_140 0.0785300898 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
10 Hb_005532_080 0.0831167333 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
11 Hb_024723_010 0.0835759693 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
12 Hb_163566_010 0.0843343258 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
13 Hb_001534_130 0.0857145325 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
14 Hb_000933_030 0.0862332753 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
15 Hb_166360_010 0.0874739217 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
16 Hb_000057_090 0.0927195273 - - hypothetical protein RCOM_1494490 [Ricinus communis]
17 Hb_000742_070 0.0943050945 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
18 Hb_004079_070 0.0945450724 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
19 Hb_000915_170 0.099006599 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
20 Hb_000326_120 0.1045027083 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_010577_020 Hb_010577_020 Hb_056506_040 Hb_056506_040 Hb_010577_020--Hb_056506_040 Hb_005833_010 Hb_005833_010 Hb_010577_020--Hb_005833_010 Hb_000358_260 Hb_000358_260 Hb_010577_020--Hb_000358_260 Hb_011549_040 Hb_011549_040 Hb_010577_020--Hb_011549_040 Hb_068804_190 Hb_068804_190 Hb_010577_020--Hb_068804_190 Hb_000111_490 Hb_000111_490 Hb_010577_020--Hb_000111_490 Hb_056506_040--Hb_000111_490 Hb_056506_040--Hb_068804_190 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_005532_080 Hb_005532_080 Hb_056506_040--Hb_005532_080 Hb_056506_040--Hb_011549_040 Hb_126714_010 Hb_126714_010 Hb_005833_010--Hb_126714_010 Hb_163566_010 Hb_163566_010 Hb_005833_010--Hb_163566_010 Hb_006588_140 Hb_006588_140 Hb_005833_010--Hb_006588_140 Hb_005833_010--Hb_000358_260 Hb_001426_020 Hb_001426_020 Hb_005833_010--Hb_001426_020 Hb_000915_170 Hb_000915_170 Hb_000358_260--Hb_000915_170 Hb_000358_260--Hb_056506_040 Hb_000928_030 Hb_000928_030 Hb_000358_260--Hb_000928_030 Hb_006816_380 Hb_006816_380 Hb_000358_260--Hb_006816_380 Hb_011549_040--Hb_068804_190 Hb_166360_010 Hb_166360_010 Hb_011549_040--Hb_166360_010 Hb_000933_030 Hb_000933_030 Hb_011549_040--Hb_000933_030 Hb_011549_040--Hb_005532_080 Hb_068804_190--Hb_005532_080 Hb_068804_190--Hb_166360_010 Hb_068804_190--Hb_000111_490 Hb_000111_490--Hb_024723_010 Hb_000485_100 Hb_000485_100 Hb_000111_490--Hb_000485_100 Hb_002391_010 Hb_002391_010 Hb_000111_490--Hb_002391_010 Hb_001926_080 Hb_001926_080 Hb_000111_490--Hb_001926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.316769 0.539299 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.368399

CAGE analysis