Hb_001426_020

Information

Type -
Description -
Location Contig1426: 34505-37941
Sequence    

Annotation

kegg
ID cic:CICLE_v10033594mg
description hypothetical protein
nr
ID XP_006437528.1
description hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID V4SSH0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033594mg PE=4 SV=1
Gene Ontology
ID GO:0016301
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11295: 34571-34849 , PASA_asmbl_11296: 35478-35716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001426_020 0.0 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
2 Hb_000487_080 0.0256632942 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
3 Hb_016734_100 0.0276807704 - - -
4 Hb_001642_020 0.0417921634 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
5 Hb_001031_140 0.0518704948 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
6 Hb_163566_010 0.0581310322 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
7 Hb_005833_010 0.0665058453 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
8 Hb_001141_180 0.0680009157 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
9 Hb_126714_010 0.0680826003 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
10 Hb_004880_020 0.0699850331 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
11 Hb_006588_140 0.0737505847 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
12 Hb_012035_010 0.0744419128 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
13 Hb_009663_020 0.0748288484 - - -
14 Hb_007120_120 0.0756717535 - - protein binding protein, putative [Ricinus communis]
15 Hb_009225_060 0.0823847392 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
16 Hb_002043_020 0.0844326763 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
17 Hb_001652_100 0.0845026081 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
18 Hb_189208_070 0.0853589603 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
19 Hb_000077_020 0.0893635686 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001728_070 0.0896253092 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]

Gene co-expression network

sample Hb_001426_020 Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_001426_020--Hb_000487_080 Hb_016734_100 Hb_016734_100 Hb_001426_020--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_001426_020--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_001426_020--Hb_001031_140 Hb_163566_010 Hb_163566_010 Hb_001426_020--Hb_163566_010 Hb_005833_010 Hb_005833_010 Hb_001426_020--Hb_005833_010 Hb_000487_080--Hb_016734_100 Hb_000487_080--Hb_001642_020 Hb_000487_080--Hb_001031_140 Hb_012035_010 Hb_012035_010 Hb_000487_080--Hb_012035_010 Hb_000487_080--Hb_163566_010 Hb_016734_100--Hb_001642_020 Hb_016734_100--Hb_001031_140 Hb_007120_120 Hb_007120_120 Hb_016734_100--Hb_007120_120 Hb_009663_020 Hb_009663_020 Hb_016734_100--Hb_009663_020 Hb_001642_020--Hb_001031_140 Hb_001141_180 Hb_001141_180 Hb_001642_020--Hb_001141_180 Hb_001652_100 Hb_001652_100 Hb_001642_020--Hb_001652_100 Hb_001031_140--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001031_140--Hb_001728_070 Hb_001206_110 Hb_001206_110 Hb_001031_140--Hb_001206_110 Hb_002043_020 Hb_002043_020 Hb_001031_140--Hb_002043_020 Hb_163566_010--Hb_005833_010 Hb_163566_010--Hb_009663_020 Hb_163566_010--Hb_016734_100 Hb_024071_030 Hb_024071_030 Hb_163566_010--Hb_024071_030 Hb_126714_010 Hb_126714_010 Hb_005833_010--Hb_126714_010 Hb_006588_140 Hb_006588_140 Hb_005833_010--Hb_006588_140 Hb_010577_020 Hb_010577_020 Hb_005833_010--Hb_010577_020 Hb_000358_260 Hb_000358_260 Hb_005833_010--Hb_000358_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.930039 0.794003 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.877794

CAGE analysis