Hb_005833_010

Information

Type -
Description -
Location Contig5833: 16755-17039
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04240g
description POPTRDRAFT_558016; chlororespiratory reduction 2 family protein
nr
ID XP_012064759.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
swissprot
ID Q9STF3
description Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
trembl
ID A0A067LIE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05476 PE=4 SV=1
Gene Ontology
ID GO:0006355
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005833_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
2 Hb_126714_010 0.0391539792 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
3 Hb_163566_010 0.0393871822 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
4 Hb_006588_140 0.0445981929 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
5 Hb_010577_020 0.0577336048 - - -
6 Hb_000358_260 0.0650373144 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
7 Hb_001426_020 0.0665058453 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
8 Hb_000487_080 0.0743554263 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
9 Hb_001534_130 0.0760111886 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
10 Hb_016734_100 0.0805818902 - - -
11 Hb_056506_040 0.086878254 - - -
12 Hb_009663_020 0.0909123644 - - -
13 Hb_000915_170 0.0931077964 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
14 Hb_000321_110 0.0936707618 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
15 Hb_001642_020 0.0937698155 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
16 Hb_000928_030 0.0976306586 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
17 Hb_189208_070 0.0989824409 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
18 Hb_024071_030 0.0996645528 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
19 Hb_009225_060 0.1020859835 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
20 Hb_006816_380 0.102146275 - - PREDICTED: kinesin-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_005833_010 Hb_005833_010 Hb_126714_010 Hb_126714_010 Hb_005833_010--Hb_126714_010 Hb_163566_010 Hb_163566_010 Hb_005833_010--Hb_163566_010 Hb_006588_140 Hb_006588_140 Hb_005833_010--Hb_006588_140 Hb_010577_020 Hb_010577_020 Hb_005833_010--Hb_010577_020 Hb_000358_260 Hb_000358_260 Hb_005833_010--Hb_000358_260 Hb_001426_020 Hb_001426_020 Hb_005833_010--Hb_001426_020 Hb_126714_010--Hb_006588_140 Hb_009225_060 Hb_009225_060 Hb_126714_010--Hb_009225_060 Hb_126714_010--Hb_001426_020 Hb_126714_010--Hb_163566_010 Hb_126714_010--Hb_000358_260 Hb_009663_020 Hb_009663_020 Hb_163566_010--Hb_009663_020 Hb_016734_100 Hb_016734_100 Hb_163566_010--Hb_016734_100 Hb_163566_010--Hb_001426_020 Hb_024071_030 Hb_024071_030 Hb_163566_010--Hb_024071_030 Hb_000487_080 Hb_000487_080 Hb_163566_010--Hb_000487_080 Hb_006588_140--Hb_009225_060 Hb_006588_140--Hb_001426_020 Hb_006588_140--Hb_000358_260 Hb_001534_130 Hb_001534_130 Hb_006588_140--Hb_001534_130 Hb_056506_040 Hb_056506_040 Hb_010577_020--Hb_056506_040 Hb_010577_020--Hb_000358_260 Hb_011549_040 Hb_011549_040 Hb_010577_020--Hb_011549_040 Hb_068804_190 Hb_068804_190 Hb_010577_020--Hb_068804_190 Hb_000111_490 Hb_000111_490 Hb_010577_020--Hb_000111_490 Hb_000915_170 Hb_000915_170 Hb_000358_260--Hb_000915_170 Hb_000358_260--Hb_056506_040 Hb_000928_030 Hb_000928_030 Hb_000358_260--Hb_000928_030 Hb_006816_380 Hb_006816_380 Hb_000358_260--Hb_006816_380 Hb_001426_020--Hb_000487_080 Hb_001426_020--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_001426_020--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_001426_020--Hb_001031_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.480781 0.595078 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.50481

CAGE analysis