Hb_056506_040

Information

Type -
Description -
Location Contig56506: 10832-11347
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48992: 10833-29469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056506_040 0.0 - - -
2 Hb_000111_490 0.0338942651 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010577_020 0.0385876526 - - -
4 Hb_068804_190 0.0391405009 - - kinase, putative [Ricinus communis]
5 Hb_024723_010 0.0471408918 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
6 Hb_005532_080 0.0565829411 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
7 Hb_011549_040 0.0592508386 - - -
8 Hb_166360_010 0.0706358126 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
9 Hb_000358_260 0.0728343563 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
10 Hb_000326_120 0.077922319 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
11 Hb_000485_100 0.0821328016 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
12 Hb_000057_090 0.085601261 - - hypothetical protein RCOM_1494490 [Ricinus communis]
13 Hb_002391_010 0.0859974503 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
14 Hb_005833_010 0.086878254 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
15 Hb_006588_140 0.0897555366 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
16 Hb_126714_010 0.0916505896 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
17 Hb_001926_080 0.0925987483 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
18 Hb_007382_110 0.0928892734 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
19 Hb_000933_030 0.0930858827 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
20 Hb_001278_120 0.0948831957 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]

Gene co-expression network

sample Hb_056506_040 Hb_056506_040 Hb_000111_490 Hb_000111_490 Hb_056506_040--Hb_000111_490 Hb_010577_020 Hb_010577_020 Hb_056506_040--Hb_010577_020 Hb_068804_190 Hb_068804_190 Hb_056506_040--Hb_068804_190 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_005532_080 Hb_005532_080 Hb_056506_040--Hb_005532_080 Hb_011549_040 Hb_011549_040 Hb_056506_040--Hb_011549_040 Hb_000111_490--Hb_024723_010 Hb_000485_100 Hb_000485_100 Hb_000111_490--Hb_000485_100 Hb_002391_010 Hb_002391_010 Hb_000111_490--Hb_002391_010 Hb_000111_490--Hb_068804_190 Hb_001926_080 Hb_001926_080 Hb_000111_490--Hb_001926_080 Hb_005833_010 Hb_005833_010 Hb_010577_020--Hb_005833_010 Hb_000358_260 Hb_000358_260 Hb_010577_020--Hb_000358_260 Hb_010577_020--Hb_011549_040 Hb_010577_020--Hb_068804_190 Hb_010577_020--Hb_000111_490 Hb_068804_190--Hb_005532_080 Hb_166360_010 Hb_166360_010 Hb_068804_190--Hb_166360_010 Hb_068804_190--Hb_011549_040 Hb_024723_010--Hb_000485_100 Hb_024723_010--Hb_002391_010 Hb_024723_010--Hb_001926_080 Hb_000326_120 Hb_000326_120 Hb_024723_010--Hb_000326_120 Hb_005532_080--Hb_166360_010 Hb_005532_080--Hb_011549_040 Hb_007382_110 Hb_007382_110 Hb_005532_080--Hb_007382_110 Hb_162450_010 Hb_162450_010 Hb_005532_080--Hb_162450_010 Hb_011549_040--Hb_166360_010 Hb_000933_030 Hb_000933_030 Hb_011549_040--Hb_000933_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.128474 0.265324 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.188562

CAGE analysis