Hb_011549_040

Information

Type -
Description -
Location Contig11549: 28739-31783
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011549_040 0.0 - - -
2 Hb_068804_190 0.0324199017 - - kinase, putative [Ricinus communis]
3 Hb_166360_010 0.0326122568 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
4 Hb_000933_030 0.0352802644 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
5 Hb_005532_080 0.0448549568 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
6 Hb_056506_040 0.0592508386 - - -
7 Hb_010577_020 0.0618935764 - - -
8 Hb_004218_270 0.0672919543 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
9 Hb_162450_010 0.0674119511 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
10 Hb_000742_070 0.0711948495 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
11 Hb_004079_070 0.0771838092 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
12 Hb_000816_140 0.0786959931 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
13 Hb_093084_030 0.0816125315 - - oleosin2 [Plukenetia volubilis]
14 Hb_023582_030 0.0816765582 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000057_090 0.0839680418 - - hypothetical protein RCOM_1494490 [Ricinus communis]
16 Hb_000111_490 0.0871031772 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011689_010 0.0919288278 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
18 Hb_017110_030 0.0930572993 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
19 Hb_000815_050 0.0935320946 - - PREDICTED: expansin-A1 [Populus euphratica]
20 Hb_010883_170 0.093671902 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_011549_040 Hb_011549_040 Hb_068804_190 Hb_068804_190 Hb_011549_040--Hb_068804_190 Hb_166360_010 Hb_166360_010 Hb_011549_040--Hb_166360_010 Hb_000933_030 Hb_000933_030 Hb_011549_040--Hb_000933_030 Hb_005532_080 Hb_005532_080 Hb_011549_040--Hb_005532_080 Hb_056506_040 Hb_056506_040 Hb_011549_040--Hb_056506_040 Hb_010577_020 Hb_010577_020 Hb_011549_040--Hb_010577_020 Hb_068804_190--Hb_005532_080 Hb_068804_190--Hb_166360_010 Hb_068804_190--Hb_056506_040 Hb_000111_490 Hb_000111_490 Hb_068804_190--Hb_000111_490 Hb_068804_190--Hb_010577_020 Hb_166360_010--Hb_005532_080 Hb_162450_010 Hb_162450_010 Hb_166360_010--Hb_162450_010 Hb_004218_270 Hb_004218_270 Hb_166360_010--Hb_004218_270 Hb_166360_010--Hb_000933_030 Hb_000742_070 Hb_000742_070 Hb_000933_030--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000933_030--Hb_023582_030 Hb_000933_030--Hb_004218_270 Hb_000134_190 Hb_000134_190 Hb_000933_030--Hb_000134_190 Hb_007382_110 Hb_007382_110 Hb_005532_080--Hb_007382_110 Hb_005532_080--Hb_056506_040 Hb_005532_080--Hb_162450_010 Hb_056506_040--Hb_000111_490 Hb_056506_040--Hb_010577_020 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_005833_010 Hb_005833_010 Hb_010577_020--Hb_005833_010 Hb_000358_260 Hb_000358_260 Hb_010577_020--Hb_000358_260 Hb_010577_020--Hb_000111_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.28787 2.95394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.51443

CAGE analysis