Hb_023582_030

Information

Type -
Description -
Location Contig23582: 30541-34050
Sequence    

Annotation

kegg
ID rcu:RCOM_1247050
description WD-repeat protein, putative
nr
ID XP_002527721.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9XSC3
description WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1
trembl
ID B9SP02
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1247050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24648: 32456-34347
cDNA
(Sanger)
(ID:Location)		 034_C03.ab1: 32459-33717

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023582_030 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000134_190 0.0211016568 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
3 Hb_000742_070 0.021541742 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
4 Hb_017110_030 0.0350326077 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
5 Hb_000933_030 0.0496033381 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
6 Hb_004686_040 0.0524477531 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
7 Hb_186458_010 0.0547317539 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
8 Hb_083963_010 0.0593198776 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
9 Hb_000815_050 0.0751705317 - - PREDICTED: expansin-A1 [Populus euphratica]
10 Hb_011549_040 0.0816765582 - - -
11 Hb_029883_010 0.0878635119 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
12 Hb_004313_010 0.0887821152 - - PREDICTED: patatin-like protein 1 [Prunus mume]
13 Hb_000109_200 0.0892402349 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
14 Hb_000020_170 0.0911221878 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
15 Hb_031012_030 0.0948652509 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
16 Hb_004218_270 0.0976489212 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
17 Hb_004079_070 0.0992473438 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
18 Hb_012653_050 0.1005115633 - - hypothetical protein RCOM_0460020 [Ricinus communis]
19 Hb_000816_140 0.1024840581 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
20 Hb_166360_010 0.1028027498 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]

Gene co-expression network

sample Hb_023582_030 Hb_023582_030 Hb_000134_190 Hb_000134_190 Hb_023582_030--Hb_000134_190 Hb_000742_070 Hb_000742_070 Hb_023582_030--Hb_000742_070 Hb_017110_030 Hb_017110_030 Hb_023582_030--Hb_017110_030 Hb_000933_030 Hb_000933_030 Hb_023582_030--Hb_000933_030 Hb_004686_040 Hb_004686_040 Hb_023582_030--Hb_004686_040 Hb_186458_010 Hb_186458_010 Hb_023582_030--Hb_186458_010 Hb_000134_190--Hb_004686_040 Hb_000134_190--Hb_000742_070 Hb_000134_190--Hb_017110_030 Hb_000134_190--Hb_186458_010 Hb_000134_190--Hb_000933_030 Hb_000742_070--Hb_017110_030 Hb_000742_070--Hb_000933_030 Hb_083963_010 Hb_083963_010 Hb_000742_070--Hb_083963_010 Hb_000742_070--Hb_186458_010 Hb_017110_030--Hb_083963_010 Hb_017110_030--Hb_186458_010 Hb_017110_030--Hb_000933_030 Hb_011549_040 Hb_011549_040 Hb_000933_030--Hb_011549_040 Hb_166360_010 Hb_166360_010 Hb_000933_030--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_000933_030--Hb_004218_270 Hb_000020_170 Hb_000020_170 Hb_004686_040--Hb_000020_170 Hb_029883_010 Hb_029883_010 Hb_004686_040--Hb_029883_010 Hb_000109_200 Hb_000109_200 Hb_004686_040--Hb_000109_200 Hb_004686_040--Hb_000742_070 Hb_004313_010 Hb_004313_010 Hb_186458_010--Hb_004313_010 Hb_186458_010--Hb_083963_010 Hb_031012_030 Hb_031012_030 Hb_186458_010--Hb_031012_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.115543 0.223442 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0786609

CAGE analysis