Hb_017110_030

Information

Type -
Description -
Location Contig17110: 53359-58857
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47280g
description POPTRDRAFT_829963; hypothetical protein
nr
ID XP_012078498.1
description PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
swissprot
ID Q9ZSP5
description Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1
trembl
ID A0A067K933
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13182 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15997: 58337-58488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017110_030 0.0 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
2 Hb_000742_070 0.0245367115 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
3 Hb_083963_010 0.0341226781 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
4 Hb_186458_010 0.0349873605 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
5 Hb_023582_030 0.0350326077 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000134_190 0.0513563123 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
7 Hb_000933_030 0.0701383272 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
8 Hb_004313_010 0.0728731816 - - PREDICTED: patatin-like protein 1 [Prunus mume]
9 Hb_004686_040 0.0840798888 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
10 Hb_000815_050 0.0844233072 - - PREDICTED: expansin-A1 [Populus euphratica]
11 Hb_031012_030 0.0852995251 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
12 Hb_011549_040 0.0930572993 - - -
13 Hb_012653_050 0.0983573719 - - hypothetical protein RCOM_0460020 [Ricinus communis]
14 Hb_000676_360 0.0995270188 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
15 Hb_001956_130 0.1035078104 - - catalytic, putative [Ricinus communis]
16 Hb_000109_200 0.1041083241 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
17 Hb_004079_070 0.1043949986 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
18 Hb_010577_020 0.1045400278 - - -
19 Hb_054316_010 0.1110772078 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_000816_140 0.1139546773 - - PREDICTED: peroxidase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_017110_030 Hb_017110_030 Hb_000742_070 Hb_000742_070 Hb_017110_030--Hb_000742_070 Hb_083963_010 Hb_083963_010 Hb_017110_030--Hb_083963_010 Hb_186458_010 Hb_186458_010 Hb_017110_030--Hb_186458_010 Hb_023582_030 Hb_023582_030 Hb_017110_030--Hb_023582_030 Hb_000134_190 Hb_000134_190 Hb_017110_030--Hb_000134_190 Hb_000933_030 Hb_000933_030 Hb_017110_030--Hb_000933_030 Hb_000742_070--Hb_023582_030 Hb_000742_070--Hb_000134_190 Hb_000742_070--Hb_000933_030 Hb_000742_070--Hb_083963_010 Hb_000742_070--Hb_186458_010 Hb_083963_010--Hb_186458_010 Hb_083963_010--Hb_023582_030 Hb_083963_010--Hb_000134_190 Hb_004313_010 Hb_004313_010 Hb_083963_010--Hb_004313_010 Hb_186458_010--Hb_004313_010 Hb_031012_030 Hb_031012_030 Hb_186458_010--Hb_031012_030 Hb_186458_010--Hb_023582_030 Hb_023582_030--Hb_000134_190 Hb_023582_030--Hb_000933_030 Hb_004686_040 Hb_004686_040 Hb_023582_030--Hb_004686_040 Hb_000134_190--Hb_004686_040 Hb_000134_190--Hb_186458_010 Hb_000134_190--Hb_000933_030 Hb_011549_040 Hb_011549_040 Hb_000933_030--Hb_011549_040 Hb_166360_010 Hb_166360_010 Hb_000933_030--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_000933_030--Hb_004218_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.248602 0.398966 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.157254

CAGE analysis