Hb_083963_010

Information

Type -
Description -
Location Contig83963: 3-491
Sequence    

Annotation

kegg
ID rcu:RCOM_1612620
description Gibberellin receptor GID1, putative
nr
ID XP_012083531.1
description PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
swissprot
ID O64640
description Probable carboxylesterase 8 OS=Arabidopsis thaliana GN=CXE8 PE=2 SV=1
trembl
ID E6NU35
description JHL05D22.16 protein OS=Jatropha curcas GN=JHL05D22.16 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083963_010 0.0 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
2 Hb_017110_030 0.0341226781 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
3 Hb_186458_010 0.045804977 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
4 Hb_000742_070 0.0490919715 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
5 Hb_023582_030 0.0593198776 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000134_190 0.0731635829 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
7 Hb_004313_010 0.0759540426 - - PREDICTED: patatin-like protein 1 [Prunus mume]
8 Hb_000815_050 0.0824409244 - - PREDICTED: expansin-A1 [Populus euphratica]
9 Hb_000933_030 0.0884354297 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
10 Hb_000676_360 0.0899160076 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
11 Hb_031012_030 0.0900356517 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
12 Hb_012653_050 0.0936484167 - - hypothetical protein RCOM_0460020 [Ricinus communis]
13 Hb_001956_130 0.0987835889 - - catalytic, putative [Ricinus communis]
14 Hb_004686_040 0.1036408772 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
15 Hb_031022_030 0.104095088 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
16 Hb_024071_030 0.1042191153 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
17 Hb_011549_040 0.1066559825 - - -
18 Hb_010577_020 0.1087323436 - - -
19 Hb_003376_020 0.1097002844 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_004079_070 0.1114969147 - - hypothetical protein JCGZ_07230 [Jatropha curcas]

Gene co-expression network

sample Hb_083963_010 Hb_083963_010 Hb_017110_030 Hb_017110_030 Hb_083963_010--Hb_017110_030 Hb_186458_010 Hb_186458_010 Hb_083963_010--Hb_186458_010 Hb_000742_070 Hb_000742_070 Hb_083963_010--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_083963_010--Hb_023582_030 Hb_000134_190 Hb_000134_190 Hb_083963_010--Hb_000134_190 Hb_004313_010 Hb_004313_010 Hb_083963_010--Hb_004313_010 Hb_017110_030--Hb_000742_070 Hb_017110_030--Hb_186458_010 Hb_017110_030--Hb_023582_030 Hb_017110_030--Hb_000134_190 Hb_000933_030 Hb_000933_030 Hb_017110_030--Hb_000933_030 Hb_186458_010--Hb_004313_010 Hb_031012_030 Hb_031012_030 Hb_186458_010--Hb_031012_030 Hb_186458_010--Hb_023582_030 Hb_186458_010--Hb_000742_070 Hb_000742_070--Hb_023582_030 Hb_000742_070--Hb_000134_190 Hb_000742_070--Hb_000933_030 Hb_023582_030--Hb_000134_190 Hb_023582_030--Hb_000933_030 Hb_004686_040 Hb_004686_040 Hb_023582_030--Hb_004686_040 Hb_000134_190--Hb_004686_040 Hb_000134_190--Hb_186458_010 Hb_000134_190--Hb_000933_030 Hb_004313_010--Hb_031012_030 Hb_004313_010--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_004313_010--Hb_000676_360 Hb_005353_010 Hb_005353_010 Hb_004313_010--Hb_005353_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0594064 0.102097 113.998 167.946 0.059926 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139242 0 0.184448 0.0911419 69.5835

CAGE analysis