Hb_004313_010

Information

Type -
Description -
Location Contig4313: 434-1794
Sequence    

Annotation

kegg
ID pmum:103340227
description patatin-like protein 1
nr
ID XP_008241846.1
description PREDICTED: patatin-like protein 1 [Prunus mume]
swissprot
ID Q84QY3
description Patatin-like protein 1 OS=Oryza sativa subsp. japonica GN=PLP1 PE=3 SV=1
trembl
ID A0A061FCA3
description Patatin (Fragment) OS=Theobroma cacao GN=TCM_033886 PE=3 SV=1
Gene Ontology
ID GO:0008152
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004313_010 0.0 - - PREDICTED: patatin-like protein 1 [Prunus mume]
2 Hb_031012_030 0.0191551386 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
3 Hb_186458_010 0.0380156252 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
4 Hb_017110_030 0.0728731816 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
5 Hb_000676_360 0.0757540668 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
6 Hb_083963_010 0.0759540426 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
7 Hb_005353_010 0.0766913319 - - Pectinesterase-1 precursor, putative [Ricinus communis]
8 Hb_000109_200 0.079547413 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
9 Hb_000134_190 0.0870410059 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
10 Hb_023582_030 0.0887821152 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000742_070 0.0935267893 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
12 Hb_009847_010 0.1031420736 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
13 Hb_000107_280 0.1036954139 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_007317_050 0.1067673234 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
15 Hb_004686_040 0.106956453 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
16 Hb_002030_010 0.1093152584 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
17 Hb_000020_170 0.1175899534 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
18 Hb_000375_220 0.1181282152 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
19 Hb_000556_060 0.1208618787 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
20 Hb_000792_100 0.1212809879 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]

Gene co-expression network

sample Hb_004313_010 Hb_004313_010 Hb_031012_030 Hb_031012_030 Hb_004313_010--Hb_031012_030 Hb_186458_010 Hb_186458_010 Hb_004313_010--Hb_186458_010 Hb_017110_030 Hb_017110_030 Hb_004313_010--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_004313_010--Hb_000676_360 Hb_083963_010 Hb_083963_010 Hb_004313_010--Hb_083963_010 Hb_005353_010 Hb_005353_010 Hb_004313_010--Hb_005353_010 Hb_031012_030--Hb_186458_010 Hb_031012_030--Hb_005353_010 Hb_000109_200 Hb_000109_200 Hb_031012_030--Hb_000109_200 Hb_031012_030--Hb_017110_030 Hb_031012_030--Hb_000676_360 Hb_186458_010--Hb_017110_030 Hb_186458_010--Hb_083963_010 Hb_023582_030 Hb_023582_030 Hb_186458_010--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_186458_010--Hb_000742_070 Hb_017110_030--Hb_000742_070 Hb_017110_030--Hb_083963_010 Hb_017110_030--Hb_023582_030 Hb_000134_190 Hb_000134_190 Hb_017110_030--Hb_000134_190 Hb_000933_030 Hb_000933_030 Hb_017110_030--Hb_000933_030 Hb_009847_010 Hb_009847_010 Hb_000676_360--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000676_360--Hb_000847_090 Hb_000375_220 Hb_000375_220 Hb_000676_360--Hb_000375_220 Hb_000676_360--Hb_186458_010 Hb_000556_060 Hb_000556_060 Hb_000676_360--Hb_000556_060 Hb_083963_010--Hb_000742_070 Hb_083963_010--Hb_023582_030 Hb_083963_010--Hb_000134_190 Hb_007317_050 Hb_007317_050 Hb_005353_010--Hb_007317_050 Hb_005353_010--Hb_000109_200 Hb_000792_100 Hb_000792_100 Hb_005353_010--Hb_000792_100 Hb_123713_010 Hb_123713_010 Hb_005353_010--Hb_123713_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.608454 0.821371 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.229671

CAGE analysis