Hb_005353_010

Information

Type -
Description -
Location Contig5353: 50590-54077
Sequence    

Annotation

kegg
ID rcu:RCOM_1393670
description Pectinesterase-1 precursor, putative (EC:3.1.1.11)
nr
ID XP_002521065.1
description Pectinesterase-1 precursor, putative [Ricinus communis]
swissprot
ID O23038
description Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2
trembl
ID B9S4Z6
description Pectinesterase OS=Ricinus communis GN=RCOM_1393670 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005353_010 0.0 - - Pectinesterase-1 precursor, putative [Ricinus communis]
2 Hb_007317_050 0.0567968806 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
3 Hb_031012_030 0.0583202966 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
4 Hb_000109_200 0.0689611876 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
5 Hb_000792_100 0.0763737981 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
6 Hb_004313_010 0.0766913319 - - PREDICTED: patatin-like protein 1 [Prunus mume]
7 Hb_123713_010 0.0898002418 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_003185_040 0.1070657369 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
9 Hb_186458_010 0.1071380145 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
10 Hb_105377_010 0.1093449571 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
11 Hb_000020_170 0.1122380981 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
12 Hb_005666_010 0.1210503084 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
13 Hb_000107_280 0.1231665476 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_007477_010 0.1235196328 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
15 Hb_000336_010 0.1236067307 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
16 Hb_004880_040 0.1269993674 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
17 Hb_000134_190 0.1274624023 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
18 Hb_004686_040 0.1280759432 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
19 Hb_000185_180 0.1298289078 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
20 Hb_174639_010 0.1306611091 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_005353_010 Hb_005353_010 Hb_007317_050 Hb_007317_050 Hb_005353_010--Hb_007317_050 Hb_031012_030 Hb_031012_030 Hb_005353_010--Hb_031012_030 Hb_000109_200 Hb_000109_200 Hb_005353_010--Hb_000109_200 Hb_000792_100 Hb_000792_100 Hb_005353_010--Hb_000792_100 Hb_004313_010 Hb_004313_010 Hb_005353_010--Hb_004313_010 Hb_123713_010 Hb_123713_010 Hb_005353_010--Hb_123713_010 Hb_007317_050--Hb_000109_200 Hb_000020_170 Hb_000020_170 Hb_007317_050--Hb_000020_170 Hb_016734_110 Hb_016734_110 Hb_007317_050--Hb_016734_110 Hb_000666_040 Hb_000666_040 Hb_007317_050--Hb_000666_040 Hb_007317_050--Hb_031012_030 Hb_031012_030--Hb_004313_010 Hb_186458_010 Hb_186458_010 Hb_031012_030--Hb_186458_010 Hb_031012_030--Hb_000109_200 Hb_017110_030 Hb_017110_030 Hb_031012_030--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_031012_030--Hb_000676_360 Hb_000109_200--Hb_000020_170 Hb_004686_040 Hb_004686_040 Hb_000109_200--Hb_004686_040 Hb_000134_190 Hb_000134_190 Hb_000109_200--Hb_000134_190 Hb_000792_100--Hb_007317_050 Hb_000792_100--Hb_123713_010 Hb_000792_100--Hb_031012_030 Hb_000792_100--Hb_000109_200 Hb_003185_040 Hb_003185_040 Hb_000792_100--Hb_003185_040 Hb_004313_010--Hb_186458_010 Hb_004313_010--Hb_017110_030 Hb_004313_010--Hb_000676_360 Hb_083963_010 Hb_083963_010 Hb_004313_010--Hb_083963_010 Hb_000336_010 Hb_000336_010 Hb_123713_010--Hb_000336_010 Hb_164853_010 Hb_164853_010 Hb_123713_010--Hb_164853_010 Hb_004724_280 Hb_004724_280 Hb_123713_010--Hb_004724_280 Hb_105377_010 Hb_105377_010 Hb_123713_010--Hb_105377_010 Hb_123713_010--Hb_007317_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.50603 2.24482 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.342936

CAGE analysis