Hb_164853_010

Information

Type -
Description -
Location Contig164853: 181-480
Sequence    

Annotation

kegg
ID rcu:RCOM_1407220
description Patatin precursor, putative
nr
ID XP_002523558.1
description Patatin precursor, putative [Ricinus communis]
swissprot
ID Q6ZJD3
description Patatin-like protein 2 OS=Oryza sativa subsp. japonica GN=PLP2 PE=3 SV=1
trembl
ID B9SC39
description Patatin OS=Ricinus communis GN=RCOM_1407220 PE=3 SV=1
Gene Ontology
ID GO:0016740
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164853_010 0.0 - - Patatin precursor, putative [Ricinus communis]
2 Hb_012675_010 0.0316310669 - - zinc finger protein, putative [Ricinus communis]
3 Hb_003420_010 0.0563364234 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000141_050 0.06737879 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
5 Hb_013394_110 0.0842236871 - - zinc finger protein, putative [Ricinus communis]
6 Hb_005666_010 0.0911921586 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
7 Hb_000336_010 0.0912593922 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
8 Hb_014776_010 0.0926971788 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
9 Hb_007138_020 0.0926990653 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
10 Hb_088508_010 0.0927003776 - - cytochrome P450, putative [Ricinus communis]
11 Hb_001414_070 0.0927004865 - - Zinc finger protein GIS2 [Medicago truncatula]
12 Hb_014223_030 0.0927103345 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
13 Hb_002471_030 0.0927185937 - - PREDICTED: cyclin-J18 [Jatropha curcas]
14 Hb_000018_080 0.0928319967 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
15 Hb_000245_010 0.0929030558 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
16 Hb_007292_040 0.0929696409 - - Plastid developmental protein DAG [Theobroma cacao]
17 Hb_000762_100 0.0930033783 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
18 Hb_001140_120 0.093028332 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
19 Hb_001098_060 0.0931044881 - - -
20 Hb_003203_010 0.093382943 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]

Gene co-expression network

sample Hb_164853_010 Hb_164853_010 Hb_012675_010 Hb_012675_010 Hb_164853_010--Hb_012675_010 Hb_003420_010 Hb_003420_010 Hb_164853_010--Hb_003420_010 Hb_000141_050 Hb_000141_050 Hb_164853_010--Hb_000141_050 Hb_013394_110 Hb_013394_110 Hb_164853_010--Hb_013394_110 Hb_005666_010 Hb_005666_010 Hb_164853_010--Hb_005666_010 Hb_000336_010 Hb_000336_010 Hb_164853_010--Hb_000336_010 Hb_012675_010--Hb_000141_050 Hb_012675_010--Hb_003420_010 Hb_188742_010 Hb_188742_010 Hb_012675_010--Hb_188742_010 Hb_001158_210 Hb_001158_210 Hb_012675_010--Hb_001158_210 Hb_128935_010 Hb_128935_010 Hb_012675_010--Hb_128935_010 Hb_003420_010--Hb_000336_010 Hb_000175_080 Hb_000175_080 Hb_003420_010--Hb_000175_080 Hb_086720_010 Hb_086720_010 Hb_003420_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_003420_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_003420_010--Hb_000295_140 Hb_000733_140 Hb_000733_140 Hb_000141_050--Hb_000733_140 Hb_001343_070 Hb_001343_070 Hb_000141_050--Hb_001343_070 Hb_002909_030 Hb_002909_030 Hb_000141_050--Hb_002909_030 Hb_001689_060 Hb_001689_060 Hb_000141_050--Hb_001689_060 Hb_002918_100 Hb_002918_100 Hb_000141_050--Hb_002918_100 Hb_005858_010 Hb_005858_010 Hb_013394_110--Hb_005858_010 Hb_012758_020 Hb_012758_020 Hb_013394_110--Hb_012758_020 Hb_000245_010 Hb_000245_010 Hb_013394_110--Hb_000245_010 Hb_002383_010 Hb_002383_010 Hb_013394_110--Hb_002383_010 Hb_000005_150 Hb_000005_150 Hb_013394_110--Hb_000005_150 Hb_001414_070 Hb_001414_070 Hb_013394_110--Hb_001414_070 Hb_000815_010 Hb_000815_010 Hb_005666_010--Hb_000815_010 Hb_000742_040 Hb_000742_040 Hb_005666_010--Hb_000742_040 Hb_007317_050 Hb_007317_050 Hb_005666_010--Hb_007317_050 Hb_005666_010--Hb_012675_010 Hb_016734_110 Hb_016734_110 Hb_005666_010--Hb_016734_110 Hb_000336_010--Hb_000175_080 Hb_004724_280 Hb_004724_280 Hb_000336_010--Hb_004724_280 Hb_001123_330 Hb_001123_330 Hb_000336_010--Hb_001123_330 Hb_003185_040 Hb_003185_040 Hb_000336_010--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_000336_010--Hb_105377_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 9.15152 17.0474 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.455233

CAGE analysis