Hb_000141_050

Information

Type -
Description -
Location Contig141: 69903-71717
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00460g
description hypothetical protein
nr
ID XP_006368201.1
description hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
swissprot
ID Q93VK8
description Root meristem growth factor 6 OS=Arabidopsis thaliana GN=RGF6 PE=3 SV=1
trembl
ID U5GMJ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00460g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11082: 70231-71865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_050 0.0 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
2 Hb_012675_010 0.038049043 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000733_140 0.0610191578 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
4 Hb_001343_070 0.0610696682 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
5 Hb_002909_030 0.0610777698 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
6 Hb_001689_060 0.0610989702 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
7 Hb_002918_100 0.0614395825 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
8 Hb_000032_110 0.0614536707 - - nadhp hc toxin reductase, putative [Ricinus communis]
9 Hb_001545_090 0.0614675183 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
10 Hb_023930_010 0.0617015292 - - hypothetical protein RCOM_0641040 [Ricinus communis]
11 Hb_184500_020 0.0618558913 - - -
12 Hb_053709_020 0.0618726958 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_000235_020 0.0620714449 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000039_130 0.0622275776 - - -
15 Hb_001973_020 0.0626267549 - - -
16 Hb_000494_140 0.0626772183 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
17 Hb_006277_040 0.062754321 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
18 Hb_001660_110 0.0628069288 - - amino acid transporter, putative [Ricinus communis]
19 Hb_000125_050 0.0630514352 - - -
20 Hb_000853_320 0.0630644138 - - -

Gene co-expression network

sample Hb_000141_050 Hb_000141_050 Hb_012675_010 Hb_012675_010 Hb_000141_050--Hb_012675_010 Hb_000733_140 Hb_000733_140 Hb_000141_050--Hb_000733_140 Hb_001343_070 Hb_001343_070 Hb_000141_050--Hb_001343_070 Hb_002909_030 Hb_002909_030 Hb_000141_050--Hb_002909_030 Hb_001689_060 Hb_001689_060 Hb_000141_050--Hb_001689_060 Hb_002918_100 Hb_002918_100 Hb_000141_050--Hb_002918_100 Hb_164853_010 Hb_164853_010 Hb_012675_010--Hb_164853_010 Hb_003420_010 Hb_003420_010 Hb_012675_010--Hb_003420_010 Hb_188742_010 Hb_188742_010 Hb_012675_010--Hb_188742_010 Hb_001158_210 Hb_001158_210 Hb_012675_010--Hb_001158_210 Hb_128935_010 Hb_128935_010 Hb_012675_010--Hb_128935_010 Hb_000733_140--Hb_001689_060 Hb_000733_140--Hb_001343_070 Hb_000733_140--Hb_002909_030 Hb_000733_140--Hb_002918_100 Hb_000032_110 Hb_000032_110 Hb_000733_140--Hb_000032_110 Hb_023930_010 Hb_023930_010 Hb_000733_140--Hb_023930_010 Hb_001343_070--Hb_002909_030 Hb_001545_090 Hb_001545_090 Hb_001343_070--Hb_001545_090 Hb_001343_070--Hb_001689_060 Hb_000235_020 Hb_000235_020 Hb_001343_070--Hb_000235_020 Hb_001343_070--Hb_002918_100 Hb_002909_030--Hb_001545_090 Hb_002909_030--Hb_001689_060 Hb_002909_030--Hb_000235_020 Hb_002909_030--Hb_002918_100 Hb_001689_060--Hb_002918_100 Hb_001689_060--Hb_000032_110 Hb_001689_060--Hb_023930_010 Hb_002918_100--Hb_000032_110 Hb_002918_100--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_002918_100--Hb_184500_020 Hb_053709_020 Hb_053709_020 Hb_002918_100--Hb_053709_020 Hb_000039_130 Hb_000039_130 Hb_002918_100--Hb_000039_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.13708 17.6657 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.185543

CAGE analysis