Hb_053709_020

Information

Type -
Description -
Location Contig53709: 7540-9440
Sequence    

Annotation

kegg
ID rcu:RCOM_0446270
description Serine/threonine-protein kinase PBS1, putative
nr
ID XP_002534374.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID P93749
description Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1
trembl
ID B9T805
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0446270 PE=3 SV=1
Gene Ontology
ID GO:0004713
description probable protein kinase at2g41970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47604: 8009-8257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053709_020 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_184500_020 0.0001018351 - - -
3 Hb_023930_010 0.0010883555 - - hypothetical protein RCOM_0641040 [Ricinus communis]
4 Hb_000039_130 0.0019599037 - - -
5 Hb_000032_110 0.0029373999 - - nadhp hc toxin reductase, putative [Ricinus communis]
6 Hb_002918_100 0.0030564085 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
7 Hb_000494_140 0.0040767143 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
8 Hb_000125_050 0.0056350674 - - -
9 Hb_001689_060 0.007050169 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
10 Hb_000733_140 0.0094224859 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
11 Hb_000295_150 0.010155591 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_007040_020 0.0109570867 - - -
13 Hb_003914_040 0.0109646437 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
14 Hb_001343_070 0.0129354329 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
15 Hb_002909_030 0.0131174378 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
16 Hb_001545_090 0.0177734135 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
17 Hb_000235_020 0.0217327037 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008686_050 0.0230607923 - - -
19 Hb_001973_020 0.0244485779 - - -
20 Hb_006277_040 0.0250047464 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_053709_020 Hb_053709_020 Hb_184500_020 Hb_184500_020 Hb_053709_020--Hb_184500_020 Hb_023930_010 Hb_023930_010 Hb_053709_020--Hb_023930_010 Hb_000039_130 Hb_000039_130 Hb_053709_020--Hb_000039_130 Hb_000032_110 Hb_000032_110 Hb_053709_020--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_053709_020--Hb_002918_100 Hb_000494_140 Hb_000494_140 Hb_053709_020--Hb_000494_140 Hb_184500_020--Hb_023930_010 Hb_184500_020--Hb_000039_130 Hb_184500_020--Hb_000032_110 Hb_184500_020--Hb_002918_100 Hb_184500_020--Hb_000494_140 Hb_023930_010--Hb_000032_110 Hb_023930_010--Hb_002918_100 Hb_023930_010--Hb_000039_130 Hb_023930_010--Hb_000494_140 Hb_000039_130--Hb_000494_140 Hb_000125_050 Hb_000125_050 Hb_000039_130--Hb_000125_050 Hb_000039_130--Hb_000032_110 Hb_000032_110--Hb_002918_100 Hb_001689_060 Hb_001689_060 Hb_000032_110--Hb_001689_060 Hb_002918_100--Hb_001689_060 Hb_002918_100--Hb_000039_130 Hb_000494_140--Hb_000125_050 Hb_000295_150 Hb_000295_150 Hb_000494_140--Hb_000295_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0615691 0.160832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis