Hb_000494_140

Information

Type transcription factor
Description TF Family: ERF
Location Contig494: 119360-120031
Sequence    

Annotation

kegg
ID rcu:RCOM_1608410
description Ethylene-responsive transcription factor, putative
nr
ID KDP28854.1
description hypothetical protein JCGZ_14625 [Jatropha curcas]
swissprot
ID Q8L9K1
description Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2
trembl
ID A0A067KAL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14625 PE=4 SV=1
Gene Ontology
ID GO:0001101
description ethylene-responsive transcription factor 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_140 0.0 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
2 Hb_000125_050 0.0015583719 - - -
3 Hb_000039_130 0.0021168195 - - -
4 Hb_053709_020 0.0040767143 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
5 Hb_184500_020 0.0041785485 - - -
6 Hb_023930_010 0.0051650578 - - hypothetical protein RCOM_0641040 [Ricinus communis]
7 Hb_000295_150 0.0060790098 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_007040_020 0.0068805351 - - -
9 Hb_003914_040 0.0068880924 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
10 Hb_000032_110 0.0070140706 - - nadhp hc toxin reductase, putative [Ricinus communis]
11 Hb_002918_100 0.0071330766 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
12 Hb_001689_060 0.011126718 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
13 Hb_000733_140 0.0134989329 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
14 Hb_001343_070 0.017011687 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
15 Hb_002909_030 0.0171936805 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
16 Hb_008686_050 0.0189850384 - - -
17 Hb_001545_090 0.0218493206 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
18 Hb_000049_320 0.0237914974 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
19 Hb_003486_040 0.0247365133 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
20 Hb_000373_090 0.0250765066 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]

Gene co-expression network

sample Hb_000494_140 Hb_000494_140 Hb_000125_050 Hb_000125_050 Hb_000494_140--Hb_000125_050 Hb_000039_130 Hb_000039_130 Hb_000494_140--Hb_000039_130 Hb_053709_020 Hb_053709_020 Hb_000494_140--Hb_053709_020 Hb_184500_020 Hb_184500_020 Hb_000494_140--Hb_184500_020 Hb_023930_010 Hb_023930_010 Hb_000494_140--Hb_023930_010 Hb_000295_150 Hb_000295_150 Hb_000494_140--Hb_000295_150 Hb_000125_050--Hb_000039_130 Hb_000125_050--Hb_000295_150 Hb_007040_020 Hb_007040_020 Hb_000125_050--Hb_007040_020 Hb_003914_040 Hb_003914_040 Hb_000125_050--Hb_003914_040 Hb_000125_050--Hb_053709_020 Hb_000039_130--Hb_053709_020 Hb_000039_130--Hb_184500_020 Hb_000039_130--Hb_023930_010 Hb_000032_110 Hb_000032_110 Hb_000039_130--Hb_000032_110 Hb_053709_020--Hb_184500_020 Hb_053709_020--Hb_023930_010 Hb_053709_020--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_053709_020--Hb_002918_100 Hb_184500_020--Hb_023930_010 Hb_184500_020--Hb_000032_110 Hb_184500_020--Hb_002918_100 Hb_023930_010--Hb_000032_110 Hb_023930_010--Hb_002918_100 Hb_000295_150--Hb_007040_020 Hb_000295_150--Hb_003914_040 Hb_000295_150--Hb_000039_130 Hb_000295_150--Hb_053709_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0280667 0.0749103 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis