Hb_184500_020

Information

Type -
Description -
Location Contig184500: 19645-21655
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18057: 21570-22734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184500_020 0.0 - - -
2 Hb_053709_020 0.0001018351 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_023930_010 0.0009865204 - - hypothetical protein RCOM_0641040 [Ricinus communis]
4 Hb_000039_130 0.0020617386 - - -
5 Hb_000032_110 0.0028355652 - - nadhp hc toxin reductase, putative [Ricinus communis]
6 Hb_002918_100 0.0029545738 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
7 Hb_000494_140 0.0041785485 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
8 Hb_000125_050 0.0057369008 - - -
9 Hb_001689_060 0.0069483365 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
10 Hb_000733_140 0.0093206553 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
11 Hb_000295_150 0.0102574206 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_007040_020 0.0110589153 - - -
13 Hb_003914_040 0.0110664723 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
14 Hb_001343_070 0.0128336064 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
15 Hb_002909_030 0.0130156115 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
16 Hb_001545_090 0.0176715946 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
17 Hb_000235_020 0.0216308928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008686_050 0.0231625984 - - -
19 Hb_001973_020 0.0243467732 - - -
20 Hb_006277_040 0.0249029431 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_184500_020 Hb_184500_020 Hb_053709_020 Hb_053709_020 Hb_184500_020--Hb_053709_020 Hb_023930_010 Hb_023930_010 Hb_184500_020--Hb_023930_010 Hb_000039_130 Hb_000039_130 Hb_184500_020--Hb_000039_130 Hb_000032_110 Hb_000032_110 Hb_184500_020--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_184500_020--Hb_002918_100 Hb_000494_140 Hb_000494_140 Hb_184500_020--Hb_000494_140 Hb_053709_020--Hb_023930_010 Hb_053709_020--Hb_000039_130 Hb_053709_020--Hb_000032_110 Hb_053709_020--Hb_002918_100 Hb_053709_020--Hb_000494_140 Hb_023930_010--Hb_000032_110 Hb_023930_010--Hb_002918_100 Hb_023930_010--Hb_000039_130 Hb_023930_010--Hb_000494_140 Hb_000039_130--Hb_000494_140 Hb_000125_050 Hb_000125_050 Hb_000039_130--Hb_000125_050 Hb_000039_130--Hb_000032_110 Hb_000032_110--Hb_002918_100 Hb_001689_060 Hb_001689_060 Hb_000032_110--Hb_001689_060 Hb_002918_100--Hb_001689_060 Hb_002918_100--Hb_000039_130 Hb_000494_140--Hb_000125_050 Hb_000295_150 Hb_000295_150 Hb_000494_140--Hb_000295_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.535847 1.399 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis