Hb_007040_020

Information

Type -
Description -
Location Contig7040: 35559-35972
Sequence    

Annotation

kegg
ID mdm:103434058
description uncharacterized LOC103434058
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003676
description ---NA---

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007040_020 0.0 - - -
2 Hb_003914_040 7.5575e-06 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
3 Hb_000295_150 0.0008015433 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_000125_050 0.0053221936 - - -
5 Hb_000494_140 0.0068805351 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
6 Hb_000039_130 0.008997285 - - -
7 Hb_053709_020 0.0109570867 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_184500_020 0.0110589153 - - -
9 Hb_023930_010 0.0120453666 - - hypothetical protein RCOM_0641040 [Ricinus communis]
10 Hb_008686_050 0.012105367 - - -
11 Hb_000032_110 0.013894252 - - nadhp hc toxin reductase, putative [Ricinus communis]
12 Hb_002918_100 0.0140132491 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
13 Hb_000049_320 0.0169124846 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
14 Hb_003486_040 0.0178576516 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
15 Hb_001689_060 0.0180065301 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
16 Hb_000373_090 0.018197701 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
17 Hb_000834_120 0.0195828267 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
18 Hb_000733_140 0.0203784785 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
19 Hb_004881_090 0.0220633097 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
20 Hb_001343_070 0.0238907668 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_007040_020 Hb_007040_020 Hb_003914_040 Hb_003914_040 Hb_007040_020--Hb_003914_040 Hb_000295_150 Hb_000295_150 Hb_007040_020--Hb_000295_150 Hb_000125_050 Hb_000125_050 Hb_007040_020--Hb_000125_050 Hb_000494_140 Hb_000494_140 Hb_007040_020--Hb_000494_140 Hb_000039_130 Hb_000039_130 Hb_007040_020--Hb_000039_130 Hb_053709_020 Hb_053709_020 Hb_007040_020--Hb_053709_020 Hb_003914_040--Hb_000295_150 Hb_003914_040--Hb_000125_050 Hb_003914_040--Hb_000494_140 Hb_003914_040--Hb_000039_130 Hb_003914_040--Hb_053709_020 Hb_000295_150--Hb_000125_050 Hb_000295_150--Hb_000494_140 Hb_000295_150--Hb_000039_130 Hb_000295_150--Hb_053709_020 Hb_000125_050--Hb_000494_140 Hb_000125_050--Hb_000039_130 Hb_000125_050--Hb_053709_020 Hb_000494_140--Hb_000039_130 Hb_000494_140--Hb_053709_020 Hb_184500_020 Hb_184500_020 Hb_000494_140--Hb_184500_020 Hb_023930_010 Hb_023930_010 Hb_000494_140--Hb_023930_010 Hb_000039_130--Hb_053709_020 Hb_000039_130--Hb_184500_020 Hb_000039_130--Hb_023930_010 Hb_000032_110 Hb_000032_110 Hb_000039_130--Hb_000032_110 Hb_053709_020--Hb_184500_020 Hb_053709_020--Hb_023930_010 Hb_053709_020--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_053709_020--Hb_002918_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.189948 0.525841 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis