Hb_000235_020

Information

Type -
Description -
Location Contig235: 16587-17303
Sequence    

Annotation

kegg
ID rcu:RCOM_0742420
description hypothetical protein
nr
ID XP_002525523.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9SHQ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0742420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000235_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001973_020 0.0027165808 - - -
3 Hb_006277_040 0.0032729129 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
4 Hb_001660_110 0.0034966269 - - amino acid transporter, putative [Ricinus communis]
5 Hb_001545_090 0.0039600453 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
6 Hb_000853_320 0.0045489912 - - -
7 Hb_002292_060 0.0051738283 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
8 Hb_003841_010 0.0061942205 - - -
9 Hb_128935_010 0.0064851526 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
10 Hb_002909_030 0.0086164855 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
11 Hb_001343_070 0.0087984991 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
12 Hb_000733_140 0.0123114753 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
13 Hb_001158_210 0.0135406178 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001689_060 0.0146836601 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
15 Hb_002918_100 0.0186769189 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
16 Hb_000032_110 0.0187959072 - - nadhp hc toxin reductase, putative [Ricinus communis]
17 Hb_023930_010 0.0206445944 - - hypothetical protein RCOM_0641040 [Ricinus communis]
18 Hb_184500_020 0.0216308928 - - -
19 Hb_053709_020 0.0217327037 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_004669_010 0.0234412525 - - hypothetical protein JCGZ_26481 [Jatropha curcas]

Gene co-expression network

sample Hb_000235_020 Hb_000235_020 Hb_001973_020 Hb_001973_020 Hb_000235_020--Hb_001973_020 Hb_006277_040 Hb_006277_040 Hb_000235_020--Hb_006277_040 Hb_001660_110 Hb_001660_110 Hb_000235_020--Hb_001660_110 Hb_001545_090 Hb_001545_090 Hb_000235_020--Hb_001545_090 Hb_000853_320 Hb_000853_320 Hb_000235_020--Hb_000853_320 Hb_002292_060 Hb_002292_060 Hb_000235_020--Hb_002292_060 Hb_001973_020--Hb_006277_040 Hb_001973_020--Hb_001660_110 Hb_001973_020--Hb_000853_320 Hb_001973_020--Hb_002292_060 Hb_003841_010 Hb_003841_010 Hb_001973_020--Hb_003841_010 Hb_006277_040--Hb_001660_110 Hb_006277_040--Hb_000853_320 Hb_006277_040--Hb_002292_060 Hb_006277_040--Hb_003841_010 Hb_128935_010 Hb_128935_010 Hb_006277_040--Hb_128935_010 Hb_001660_110--Hb_000853_320 Hb_001660_110--Hb_002292_060 Hb_001660_110--Hb_003841_010 Hb_001660_110--Hb_128935_010 Hb_002909_030 Hb_002909_030 Hb_001545_090--Hb_002909_030 Hb_001343_070 Hb_001343_070 Hb_001545_090--Hb_001343_070 Hb_001545_090--Hb_001973_020 Hb_001545_090--Hb_006277_040 Hb_001545_090--Hb_001660_110 Hb_000853_320--Hb_002292_060 Hb_000853_320--Hb_003841_010 Hb_000853_320--Hb_128935_010 Hb_002292_060--Hb_003841_010 Hb_002292_060--Hb_128935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0256275 0.0597917 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis