Hb_002292_060

Information

Type -
Description -
Location Contig2292: 42600-47098
Sequence    

Annotation

kegg
ID cam:101498181
description genome polyprotein-like
nr
ID XP_012568598.1
description PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
swissprot
ID -
description -
trembl
ID K7KWX1
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0008233
description PREDICTED: uncharacterized protein LOC101496717

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002292_060 0.0 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
2 Hb_000853_320 0.000624844 - - -
3 Hb_003841_010 0.0010204076 - - -
4 Hb_128935_010 0.0013113451 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
5 Hb_001660_110 0.0016772158 - - amino acid transporter, putative [Ricinus communis]
6 Hb_006277_040 0.0019009306 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
7 Hb_001973_020 0.0024572638 - - -
8 Hb_000235_020 0.0051738283 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001158_210 0.008367064 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001545_090 0.0091337841 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
11 Hb_002909_030 0.0137900183 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
12 Hb_001343_070 0.0139720216 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
13 Hb_000733_140 0.017484766 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
14 Hb_004669_010 0.0182684501 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
15 Hb_001689_060 0.0198567583 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
16 Hb_001205_260 0.0216227669 - - DWNN domain isoform 2 [Theobroma cacao]
17 Hb_028447_010 0.0231865293 - - hypothetical protein RCOM_1967580 [Ricinus communis]
18 Hb_004586_100 0.0236733049 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
19 Hb_002918_100 0.0238496264 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
20 Hb_000032_110 0.0239686017 - - nadhp hc toxin reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002292_060 Hb_002292_060 Hb_000853_320 Hb_000853_320 Hb_002292_060--Hb_000853_320 Hb_003841_010 Hb_003841_010 Hb_002292_060--Hb_003841_010 Hb_128935_010 Hb_128935_010 Hb_002292_060--Hb_128935_010 Hb_001660_110 Hb_001660_110 Hb_002292_060--Hb_001660_110 Hb_006277_040 Hb_006277_040 Hb_002292_060--Hb_006277_040 Hb_001973_020 Hb_001973_020 Hb_002292_060--Hb_001973_020 Hb_000853_320--Hb_001660_110 Hb_000853_320--Hb_006277_040 Hb_000853_320--Hb_003841_010 Hb_000853_320--Hb_001973_020 Hb_000853_320--Hb_128935_010 Hb_003841_010--Hb_128935_010 Hb_003841_010--Hb_001660_110 Hb_003841_010--Hb_006277_040 Hb_003841_010--Hb_001973_020 Hb_128935_010--Hb_001660_110 Hb_128935_010--Hb_006277_040 Hb_128935_010--Hb_001973_020 Hb_001660_110--Hb_006277_040 Hb_001660_110--Hb_001973_020 Hb_006277_040--Hb_001973_020 Hb_000235_020 Hb_000235_020 Hb_001973_020--Hb_000235_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0191818 0.0435821 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis