Hb_002909_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2909: 11115-11819
Sequence    

Annotation

kegg
ID rcu:RCOM_1270600
description hypothetical protein
nr
ID XP_002523665.1
description hypothetical protein RCOM_1270600 [Ricinus communis]
swissprot
ID Q39262
description Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1
trembl
ID B9SCE6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1270600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_030 0.0 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
2 Hb_001343_070 0.0001820204 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
3 Hb_000733_140 0.0036951822 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
4 Hb_001545_090 0.0046565173 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
5 Hb_001689_060 0.0060675525 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
6 Hb_000235_020 0.0086164855 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002918_100 0.0100612343 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
8 Hb_000032_110 0.0101802373 - - nadhp hc toxin reductase, putative [Ricinus communis]
9 Hb_001973_020 0.0113329385 - - -
10 Hb_006277_040 0.0118892369 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
11 Hb_023930_010 0.0120291698 - - hypothetical protein RCOM_0641040 [Ricinus communis]
12 Hb_001660_110 0.0121129366 - - amino acid transporter, putative [Ricinus communis]
13 Hb_184500_020 0.0130156115 - - -
14 Hb_053709_020 0.0131174378 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_000853_320 0.0131652285 - - -
16 Hb_002292_060 0.0137900183 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
17 Hb_003841_010 0.0148103265 - - -
18 Hb_000039_130 0.0150771432 - - -
19 Hb_128935_010 0.0151012332 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
20 Hb_000494_140 0.0171936805 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]

Gene co-expression network

sample Hb_002909_030 Hb_002909_030 Hb_001343_070 Hb_001343_070 Hb_002909_030--Hb_001343_070 Hb_000733_140 Hb_000733_140 Hb_002909_030--Hb_000733_140 Hb_001545_090 Hb_001545_090 Hb_002909_030--Hb_001545_090 Hb_001689_060 Hb_001689_060 Hb_002909_030--Hb_001689_060 Hb_000235_020 Hb_000235_020 Hb_002909_030--Hb_000235_020 Hb_002918_100 Hb_002918_100 Hb_002909_030--Hb_002918_100 Hb_001343_070--Hb_000733_140 Hb_001343_070--Hb_001545_090 Hb_001343_070--Hb_001689_060 Hb_001343_070--Hb_000235_020 Hb_001343_070--Hb_002918_100 Hb_000733_140--Hb_001689_060 Hb_000733_140--Hb_002918_100 Hb_000032_110 Hb_000032_110 Hb_000733_140--Hb_000032_110 Hb_023930_010 Hb_023930_010 Hb_000733_140--Hb_023930_010 Hb_001545_090--Hb_000235_020 Hb_001973_020 Hb_001973_020 Hb_001545_090--Hb_001973_020 Hb_006277_040 Hb_006277_040 Hb_001545_090--Hb_006277_040 Hb_001660_110 Hb_001660_110 Hb_001545_090--Hb_001660_110 Hb_001689_060--Hb_002918_100 Hb_001689_060--Hb_000032_110 Hb_001689_060--Hb_023930_010 Hb_000235_020--Hb_001973_020 Hb_000235_020--Hb_006277_040 Hb_000235_020--Hb_001660_110 Hb_000853_320 Hb_000853_320 Hb_000235_020--Hb_000853_320 Hb_002292_060 Hb_002292_060 Hb_000235_020--Hb_002292_060 Hb_002918_100--Hb_000032_110 Hb_002918_100--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_002918_100--Hb_184500_020 Hb_053709_020 Hb_053709_020 Hb_002918_100--Hb_053709_020 Hb_000039_130 Hb_000039_130 Hb_002918_100--Hb_000039_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.106546 0.259889 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis