Hb_000733_140

Information

Type -
Description -
Location Contig733: 115071-116121
Sequence    

Annotation

kegg
ID rcu:RCOM_1482930
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012088349.1
description PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
swissprot
ID Q39434
description Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
trembl
ID A0A067L8Y4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01362 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab2bv-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_140 0.0 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
2 Hb_001689_060 0.0023723969 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
3 Hb_001343_070 0.003513163 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
4 Hb_002909_030 0.0036951822 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
5 Hb_002918_100 0.006366171 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
6 Hb_000032_110 0.0064851777 - - nadhp hc toxin reductase, putative [Ricinus communis]
7 Hb_023930_010 0.0083341742 - - hypothetical protein RCOM_0641040 [Ricinus communis]
8 Hb_001545_090 0.0083516286 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
9 Hb_184500_020 0.0093206553 - - -
10 Hb_053709_020 0.0094224859 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_000039_130 0.0113822815 - - -
12 Hb_000235_020 0.0123114753 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000494_140 0.0134989329 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
14 Hb_001973_020 0.0150278128 - - -
15 Hb_000125_050 0.0150571404 - - -
16 Hb_006277_040 0.0155840844 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
17 Hb_001660_110 0.015807773 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000853_320 0.0168600104 - - -
19 Hb_002292_060 0.017484766 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
20 Hb_003841_010 0.0185050154 - - -

Gene co-expression network

sample Hb_000733_140 Hb_000733_140 Hb_001689_060 Hb_001689_060 Hb_000733_140--Hb_001689_060 Hb_001343_070 Hb_001343_070 Hb_000733_140--Hb_001343_070 Hb_002909_030 Hb_002909_030 Hb_000733_140--Hb_002909_030 Hb_002918_100 Hb_002918_100 Hb_000733_140--Hb_002918_100 Hb_000032_110 Hb_000032_110 Hb_000733_140--Hb_000032_110 Hb_023930_010 Hb_023930_010 Hb_000733_140--Hb_023930_010 Hb_001689_060--Hb_002918_100 Hb_001689_060--Hb_000032_110 Hb_001689_060--Hb_001343_070 Hb_001689_060--Hb_023930_010 Hb_001689_060--Hb_002909_030 Hb_001343_070--Hb_002909_030 Hb_001545_090 Hb_001545_090 Hb_001343_070--Hb_001545_090 Hb_000235_020 Hb_000235_020 Hb_001343_070--Hb_000235_020 Hb_001343_070--Hb_002918_100 Hb_002909_030--Hb_001545_090 Hb_002909_030--Hb_000235_020 Hb_002909_030--Hb_002918_100 Hb_002918_100--Hb_000032_110 Hb_002918_100--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_002918_100--Hb_184500_020 Hb_053709_020 Hb_053709_020 Hb_002918_100--Hb_053709_020 Hb_000039_130 Hb_000039_130 Hb_002918_100--Hb_000039_130 Hb_000032_110--Hb_023930_010 Hb_000032_110--Hb_184500_020 Hb_000032_110--Hb_053709_020 Hb_000032_110--Hb_000039_130 Hb_023930_010--Hb_184500_020 Hb_023930_010--Hb_053709_020 Hb_023930_010--Hb_000039_130 Hb_000494_140 Hb_000494_140 Hb_023930_010--Hb_000494_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.598732 1.48875 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis