Hb_012675_010

Information

Type -
Description -
Location Contig12675: 3867-4413
Sequence    

Annotation

kegg
ID rcu:RCOM_0610850
description zinc finger protein, putative
nr
ID XP_002522021.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q5PNZ0
description GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1
trembl
ID B9S7Q2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0610850 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g33370-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08069: 3805-5385 , PASA_asmbl_08070: 3815-4919 , PASA_asmbl_08071: 3815-4919 , PASA_asmbl_08072: 3815-4919
cDNA
(Sanger)
(ID:Location)		 014_N18.ab1: 3805-4848 , 016_B17.ab1: 3805-4904 , 028_F12.ab1: 3805-4865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_010 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_164853_010 0.0316310669 - - Patatin precursor, putative [Ricinus communis]
3 Hb_000141_050 0.038049043 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
4 Hb_003420_010 0.0812057424 - - zinc finger protein, putative [Ricinus communis]
5 Hb_188742_010 0.0838575163 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
6 Hb_001158_210 0.0844601698 - - conserved hypothetical protein [Ricinus communis]
7 Hb_128935_010 0.0848267899 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
8 Hb_003841_010 0.0848543784 - - -
9 Hb_004669_010 0.0849301905 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
10 Hb_002292_060 0.0849588874 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
11 Hb_000853_320 0.0850288214 - - -
12 Hb_001660_110 0.0851567645 - - amino acid transporter, putative [Ricinus communis]
13 Hb_006277_040 0.0851856015 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
14 Hb_001973_020 0.0852597976 - - -
15 Hb_001205_260 0.0853479023 - - DWNN domain isoform 2 [Theobroma cacao]
16 Hb_028447_010 0.0855865731 - - hypothetical protein RCOM_1967580 [Ricinus communis]
17 Hb_004586_100 0.0856665183 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
18 Hb_000235_020 0.0856726982 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001545_090 0.0864230178 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
20 Hb_003203_010 0.0865375386 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]

Gene co-expression network

sample Hb_012675_010 Hb_012675_010 Hb_164853_010 Hb_164853_010 Hb_012675_010--Hb_164853_010 Hb_000141_050 Hb_000141_050 Hb_012675_010--Hb_000141_050 Hb_003420_010 Hb_003420_010 Hb_012675_010--Hb_003420_010 Hb_188742_010 Hb_188742_010 Hb_012675_010--Hb_188742_010 Hb_001158_210 Hb_001158_210 Hb_012675_010--Hb_001158_210 Hb_128935_010 Hb_128935_010 Hb_012675_010--Hb_128935_010 Hb_164853_010--Hb_003420_010 Hb_164853_010--Hb_000141_050 Hb_013394_110 Hb_013394_110 Hb_164853_010--Hb_013394_110 Hb_005666_010 Hb_005666_010 Hb_164853_010--Hb_005666_010 Hb_000336_010 Hb_000336_010 Hb_164853_010--Hb_000336_010 Hb_000733_140 Hb_000733_140 Hb_000141_050--Hb_000733_140 Hb_001343_070 Hb_001343_070 Hb_000141_050--Hb_001343_070 Hb_002909_030 Hb_002909_030 Hb_000141_050--Hb_002909_030 Hb_001689_060 Hb_001689_060 Hb_000141_050--Hb_001689_060 Hb_002918_100 Hb_002918_100 Hb_000141_050--Hb_002918_100 Hb_003420_010--Hb_000336_010 Hb_000175_080 Hb_000175_080 Hb_003420_010--Hb_000175_080 Hb_086720_010 Hb_086720_010 Hb_003420_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_003420_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_003420_010--Hb_000295_140 Hb_026196_020 Hb_026196_020 Hb_188742_010--Hb_026196_020 Hb_124677_070 Hb_124677_070 Hb_188742_010--Hb_124677_070 Hb_188742_010--Hb_000141_050 Hb_000896_030 Hb_000896_030 Hb_188742_010--Hb_000896_030 Hb_000742_040 Hb_000742_040 Hb_188742_010--Hb_000742_040 Hb_001158_210--Hb_128935_010 Hb_003841_010 Hb_003841_010 Hb_001158_210--Hb_003841_010 Hb_002292_060 Hb_002292_060 Hb_001158_210--Hb_002292_060 Hb_000853_320 Hb_000853_320 Hb_001158_210--Hb_000853_320 Hb_004669_010 Hb_004669_010 Hb_001158_210--Hb_004669_010 Hb_001660_110 Hb_001660_110 Hb_001158_210--Hb_001660_110 Hb_128935_010--Hb_003841_010 Hb_128935_010--Hb_002292_060 Hb_128935_010--Hb_000853_320 Hb_128935_010--Hb_001660_110 Hb_006277_040 Hb_006277_040 Hb_128935_010--Hb_006277_040 Hb_001973_020 Hb_001973_020 Hb_128935_010--Hb_001973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 20.1469 43.6659 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.918686

CAGE analysis