Hb_000896_030

Information

Type -
Description -
Location Contig896: 35438-36992
Sequence    

Annotation

kegg
ID rcu:RCOM_0925040
description hypothetical protein
nr
ID XP_002515557.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID O24329
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0925040 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61761: 35016-37236 , PASA_asmbl_61762: 34748-37236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_131748_010 0.0511444973 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
3 Hb_000134_140 0.051535458 - - lipid binding protein, putative [Ricinus communis]
4 Hb_000340_170 0.0516603656 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
5 Hb_156212_010 0.0516727083 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_000002_020 0.0517886509 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_004957_040 0.0520628204 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
8 Hb_004918_020 0.0520810024 - - -
9 Hb_003018_220 0.0521436598 - - Snakin-2 [Gossypium arboreum]
10 Hb_037000_010 0.0524427187 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
11 Hb_001491_080 0.0529726701 - - conserved hypothetical protein [Ricinus communis]
12 Hb_158909_010 0.0531898706 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_000803_280 0.0532009862 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
14 Hb_003251_020 0.0533934067 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
15 Hb_000107_690 0.0534609108 - - zinc finger protein, putative [Ricinus communis]
16 Hb_086639_110 0.0548519529 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
17 Hb_000330_010 0.0549075501 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
18 Hb_000813_110 0.0550594287 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
19 Hb_000130_430 0.0569006745 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
20 Hb_001136_150 0.0572215632 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000896_030 Hb_000896_030 Hb_131748_010 Hb_131748_010 Hb_000896_030--Hb_131748_010 Hb_000134_140 Hb_000134_140 Hb_000896_030--Hb_000134_140 Hb_000340_170 Hb_000340_170 Hb_000896_030--Hb_000340_170 Hb_156212_010 Hb_156212_010 Hb_000896_030--Hb_156212_010 Hb_000002_020 Hb_000002_020 Hb_000896_030--Hb_000002_020 Hb_004957_040 Hb_004957_040 Hb_000896_030--Hb_004957_040 Hb_131748_010--Hb_000340_170 Hb_131748_010--Hb_156212_010 Hb_131748_010--Hb_000002_020 Hb_131748_010--Hb_000134_140 Hb_004918_020 Hb_004918_020 Hb_131748_010--Hb_004918_020 Hb_003018_220 Hb_003018_220 Hb_131748_010--Hb_003018_220 Hb_000134_140--Hb_004957_040 Hb_037000_010 Hb_037000_010 Hb_000134_140--Hb_037000_010 Hb_158909_010 Hb_158909_010 Hb_000134_140--Hb_158909_010 Hb_003251_020 Hb_003251_020 Hb_000134_140--Hb_003251_020 Hb_000107_690 Hb_000107_690 Hb_000134_140--Hb_000107_690 Hb_000340_170--Hb_156212_010 Hb_000340_170--Hb_000002_020 Hb_000340_170--Hb_004918_020 Hb_000340_170--Hb_003018_220 Hb_001491_080 Hb_001491_080 Hb_000340_170--Hb_001491_080 Hb_156212_010--Hb_000002_020 Hb_156212_010--Hb_004918_020 Hb_156212_010--Hb_003018_220 Hb_156212_010--Hb_001491_080 Hb_000002_020--Hb_004918_020 Hb_000002_020--Hb_003018_220 Hb_000002_020--Hb_001491_080 Hb_000803_280 Hb_000803_280 Hb_000002_020--Hb_000803_280 Hb_004957_040--Hb_037000_010 Hb_004957_040--Hb_158909_010 Hb_004957_040--Hb_003251_020 Hb_004957_040--Hb_000107_690 Hb_086639_110 Hb_086639_110 Hb_004957_040--Hb_086639_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.773386 98.951 453.11 0.0381446 0.171969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0294073 1.88175

CAGE analysis