Hb_003251_020

Information

Type -
Description -
Location Contig3251: 102576-102833
Sequence    

Annotation

kegg
ID rcu:RCOM_1685970
description hypothetical protein
nr
ID KHG10335.1
description Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NC01
description Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gossypium arboreum GN=F383_15268 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34264: 99029-102670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003251_020 0.0 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
2 Hb_000107_690 0.000232421 - - zinc finger protein, putative [Ricinus communis]
3 Hb_158909_010 0.0007210903 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_037000_010 0.0037124007 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
5 Hb_086639_110 0.0044770777 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
6 Hb_000330_010 0.0046301045 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
7 Hb_004957_040 0.005553198 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
8 Hb_000134_140 0.0088817839 - - lipid binding protein, putative [Ricinus communis]
9 Hb_000130_430 0.0095859536 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
10 Hb_001136_150 0.0103093491 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001248_160 0.0139345902 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
12 Hb_131748_010 0.0171303525 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
13 Hb_163180_010 0.0178571329 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_001926_060 0.0189605888 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
15 Hb_007058_020 0.0199394991 - - -
16 Hb_000340_170 0.022927339 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
17 Hb_156212_010 0.0230122529 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_000002_020 0.0237685958 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_004918_020 0.0254302905 - - -
20 Hb_003018_220 0.0257526917 - - Snakin-2 [Gossypium arboreum]

Gene co-expression network

sample Hb_003251_020 Hb_003251_020 Hb_000107_690 Hb_000107_690 Hb_003251_020--Hb_000107_690 Hb_158909_010 Hb_158909_010 Hb_003251_020--Hb_158909_010 Hb_037000_010 Hb_037000_010 Hb_003251_020--Hb_037000_010 Hb_086639_110 Hb_086639_110 Hb_003251_020--Hb_086639_110 Hb_000330_010 Hb_000330_010 Hb_003251_020--Hb_000330_010 Hb_004957_040 Hb_004957_040 Hb_003251_020--Hb_004957_040 Hb_000107_690--Hb_158909_010 Hb_000107_690--Hb_037000_010 Hb_000107_690--Hb_086639_110 Hb_000107_690--Hb_000330_010 Hb_000107_690--Hb_004957_040 Hb_158909_010--Hb_037000_010 Hb_158909_010--Hb_004957_040 Hb_158909_010--Hb_086639_110 Hb_158909_010--Hb_000330_010 Hb_037000_010--Hb_004957_040 Hb_000134_140 Hb_000134_140 Hb_037000_010--Hb_000134_140 Hb_037000_010--Hb_086639_110 Hb_086639_110--Hb_000330_010 Hb_000130_430 Hb_000130_430 Hb_086639_110--Hb_000130_430 Hb_001136_150 Hb_001136_150 Hb_086639_110--Hb_001136_150 Hb_000330_010--Hb_000130_430 Hb_000330_010--Hb_001136_150 Hb_004957_040--Hb_000134_140 Hb_004957_040--Hb_086639_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.38796 5.78869 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis