Hb_000134_140

Information

Type -
Description -
Location Contig134: 95844-96194
Sequence    

Annotation

kegg
ID rcu:RCOM_1527890
description lipid binding protein, putative
nr
ID XP_002513211.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHJ2
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_1527890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09606: 92473-95129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_140 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_004957_040 0.0033287147 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
3 Hb_037000_010 0.0051695164 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
4 Hb_158909_010 0.0081607342 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_131748_010 0.0082495737 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
6 Hb_003251_020 0.0088817839 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
7 Hb_000107_690 0.0091141903 - - zinc finger protein, putative [Ricinus communis]
8 Hb_086639_110 0.0133584524 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
9 Hb_000330_010 0.0135114606 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
10 Hb_000340_170 0.0140478702 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
11 Hb_156212_010 0.0141328071 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_000002_020 0.0148893597 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
13 Hb_004918_020 0.016551546 - - -
14 Hb_003018_220 0.0168740476 - - Snakin-2 [Gossypium arboreum]
15 Hb_000130_430 0.0184665374 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
16 Hb_001136_150 0.0191897935 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001491_080 0.0204795725 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000803_280 0.0213267842 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
19 Hb_001248_160 0.0228142354 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
20 Hb_163180_010 0.0267357271 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_140 Hb_000134_140 Hb_004957_040 Hb_004957_040 Hb_000134_140--Hb_004957_040 Hb_037000_010 Hb_037000_010 Hb_000134_140--Hb_037000_010 Hb_158909_010 Hb_158909_010 Hb_000134_140--Hb_158909_010 Hb_131748_010 Hb_131748_010 Hb_000134_140--Hb_131748_010 Hb_003251_020 Hb_003251_020 Hb_000134_140--Hb_003251_020 Hb_000107_690 Hb_000107_690 Hb_000134_140--Hb_000107_690 Hb_004957_040--Hb_037000_010 Hb_004957_040--Hb_158909_010 Hb_004957_040--Hb_003251_020 Hb_004957_040--Hb_000107_690 Hb_086639_110 Hb_086639_110 Hb_004957_040--Hb_086639_110 Hb_037000_010--Hb_158909_010 Hb_037000_010--Hb_003251_020 Hb_037000_010--Hb_000107_690 Hb_037000_010--Hb_086639_110 Hb_158909_010--Hb_003251_020 Hb_158909_010--Hb_000107_690 Hb_158909_010--Hb_086639_110 Hb_000330_010 Hb_000330_010 Hb_158909_010--Hb_000330_010 Hb_000340_170 Hb_000340_170 Hb_131748_010--Hb_000340_170 Hb_156212_010 Hb_156212_010 Hb_131748_010--Hb_156212_010 Hb_000002_020 Hb_000002_020 Hb_131748_010--Hb_000002_020 Hb_004918_020 Hb_004918_020 Hb_131748_010--Hb_004918_020 Hb_003018_220 Hb_003018_220 Hb_131748_010--Hb_003018_220 Hb_003251_020--Hb_000107_690 Hb_003251_020--Hb_086639_110 Hb_003251_020--Hb_000330_010 Hb_000107_690--Hb_086639_110 Hb_000107_690--Hb_000330_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.284492 1.25159 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis